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Additions to #177 #198

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merged 26 commits into from
Mar 19, 2024
Merged

Additions to #177 #198

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a00a2be
Update subplot widths, test_plotting dataset access, remove square br…
BradyPlanden Feb 16, 2024
89e2932
Add plotting support for notebook rendering, adds kaleido as dependancy
BradyPlanden Feb 22, 2024
f853af9
+ diffevolution notebook
BradyPlanden Feb 22, 2024
fc06f1f
Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities
BradyPlanden Feb 22, 2024
d7a71a7
fix missed deletion during merge
BradyPlanden Feb 22, 2024
4f5dbe6
Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities
BradyPlanden Feb 23, 2024
ed2bf7c
Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities
BradyPlanden Feb 23, 2024
4cf9108
Revamp model, problem, and cost object from numpy arrays to dictionar…
BradyPlanden Mar 1, 2024
3428c97
Fix ukf examples, temporarily limits ukf to signal output model
BradyPlanden Mar 1, 2024
43521da
default_variables to additional_variables w/ docstrings, updt. observ…
BradyPlanden Mar 2, 2024
67d2887
Fix integration test logic, add gradient landscape plots, pin pytest …
BradyPlanden Mar 4, 2024
b6a073b
Add tests for gradient plots, up coverage
BradyPlanden Mar 4, 2024
ee4cdff
Set default SciPyMinimize method to Nelder-Mead, clean-up repo
BradyPlanden Mar 4, 2024
66efaba
unicode fix for win notebooks, update prediction shape checks, remove…
BradyPlanden Mar 8, 2024
9b03734
Updt. cost2d/optim2d x0 shape/colour, revert conftest win platform un…
BradyPlanden Mar 13, 2024
e7aef79
Updt SciPy & BaseOptimiser for maximum iterations limit - fixes #237
BradyPlanden Mar 13, 2024
afd4990
add infeasible cost tests, remove redundant scipyminimise maxiter opt…
BradyPlanden Mar 13, 2024
a9ea84c
Merge pull request #224 from pybop-team/177c-plotting-capabilities
BradyPlanden Mar 13, 2024
05c7f20
Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities
BradyPlanden Mar 14, 2024
db28440
Updt grad descent hypers for likelihood tests, add tol arg to scipy o…
BradyPlanden Mar 15, 2024
61d7d7a
Split kaleido dependancy to avoid windows hang
BradyPlanden Mar 15, 2024
744d166
small refactors and cleanup
BradyPlanden Mar 15, 2024
c1b3854
Updt changelog
BradyPlanden Mar 15, 2024
716c671
updt coverage, bugfix sigma check/wrap
BradyPlanden Mar 19, 2024
41cf0f8
Merge branch '177-plotting-capabilities' into 177b-plotting-capabilities
BradyPlanden Mar 19, 2024
a479136
coverage, bugfix model.simulateS1
BradyPlanden Mar 19, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -2,6 +2,8 @@

## Features

- [#198](https://github.com/pybop-team/PyBOP/pull/198) - Adds default subplot trace options, removes `[]` in axis plots as per SI standard, add varying signal length to quick_plot, restores design optimisation execption.
- [#224](https://github.com/pybop-team/PyBOP/pull/224) - Updated prediction objects to dictionaries, cost class calculations, added `additional_variables` argument to problem class, updated scipy.minimize defualt method to Nelder-Mead, added gradient cost landscape plots with optional argument.
- [#179](https://github.com/pybop-team/PyBOP/pull/203) - Adds `asv` configuration for benchmarking and initial benchmark suite.
- [#218](https://github.com/pybop-team/PyBOP/pull/218) - Adds likelihood base class, `GaussianLogLikelihoodKnownSigma`, `GaussianLogLikelihood`, and `ProbabilityBased` cost function. As well as addition of a maximum likelihood estimation (MLE) example.
- [#185](https://github.com/pybop-team/PyBOP/pull/185) - Adds a pull request template, additional nox sessions `quick` for standard tests + docs, `pre-commit` for pre-commit, `test` to run all standard tests, `doctest` for docs.
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