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Rename have_optional_dependency #3866

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merged 7 commits into from
Mar 5, 2024

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kratman
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@kratman kratman commented Mar 5, 2024

Description

Renames have_optional_dependency() to import_optional_dependency()

Fixes #3864

Type of change

  • Bug fix (non-breaking change which fixes an issue)

Key checklist:

  • No style issues: $ pre-commit run (or $ nox -s pre-commit) (see CONTRIBUTING.md for how to set this up to run automatically when committing locally, in just two lines of code)
  • All tests pass: $ python run-tests.py --all (or $ nox -s tests)
  • The documentation builds: $ python run-tests.py --doctest (or $ nox -s doctests)

You can run integration tests, unit tests, and doctests together at once, using $ python run-tests.py --quick (or $ nox -s quick).

Further checks:

  • Code is commented, particularly in hard-to-understand areas
  • Tests added that prove fix is effective or that feature works

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Thanks, @kratman! For next time we should look at removing such functions from the public API – I don't think it is being used by anyone currently and does not provide any useful functionality to users either.

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kratman commented Mar 5, 2024

Thanks, @kratman! For next time we should look at removing such functions from the public API – I don't think it is being used by anyone currently and does not provide any useful functionality to users either.

Yeah, python's handling of private methods makes me miss C++

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codecov bot commented Mar 5, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 99.60%. Comparing base (0767c8d) to head (cb32f63).
Report is 1 commits behind head on develop.

Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #3866      +/-   ##
===========================================
- Coverage    99.60%   99.60%   -0.01%     
===========================================
  Files          259      259              
  Lines        21272    21270       -2     
===========================================
- Hits         21188    21186       -2     
  Misses          84       84              

☔ View full report in Codecov by Sentry.
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Thanks! We should also look into adding __all__ to pybamm modules; not in this PR though.

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kratman commented Mar 5, 2024

@arjxn-py, @Saransh-cpp I saw this in latexify()

        if sympy:
            from pybamm.expression_tree.operations.latexify import Latexify

I assume this no longer make sense here either. There used to be an "import_optional_dependency" above it

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Looks good to me, thanks

pybamm/util.py Show resolved Hide resolved
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I assume this no longer make sense here either. There used to be an "import_optional_dependency" above it

Yes! IIRC we did do some hacky stuff to make sympy optional, maybe this was left behind.

@kratman kratman self-assigned this Mar 5, 2024
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arjxn-py commented Mar 5, 2024

I assume this no longer make sense here either. There used to be an "import_optional_dependency" above it

Yes, please also consider removing the import of import_optional_dependency in base_model as it should be unused now plus we can also import latexify on top now.
Edit: Already done in #3848

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We should also look into adding all to pybamm modules; not in this PR though.

I agree, xref: #2427 for public and private API discussions

@arjxn-py arjxn-py merged commit 9cc038e into pybamm-team:develop Mar 5, 2024
47 checks passed
@kratman kratman deleted the feat/renameFunction branch March 5, 2024 16:34
lorenzofavaro pushed a commit to lorenzofavaro/PyBaMM that referenced this pull request Mar 13, 2024
* Rename have_optional_dependency

* Change log

* Fix import

* style: pre-commit fixes

* Update pybamm/util.py

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>
agriyakhetarpal added a commit that referenced this pull request Mar 13, 2024
* Enable flake8-bugbear

Fix unused-loop-control-variable (B007)

Fix function-uses-loop-variable (B023)

Fix raise-without-from-inside-except (B904)

Fix mutable-argument-default (B006)

Fix no-explicit-stacklevel (B028)

Fix get-attr-with-constant (B009)

Fix loop-variable-overrides-iterator (B020)

Fix unary-prefix-increment-decrement (B002)

Fix function-call-in-default-argument (B008)

Fix cached-instance-method (B019)

* Show exception chain (B904)

* Disable single lint check (B019)

* delay xarray.DataArray initialization

* revert example

* Bump the actions group with 1 update (#3861)

Bumps the actions group with 1 update: [awalsh128/cache-apt-pkgs-action](https://github.com/awalsh128/cache-apt-pkgs-action).


Updates `awalsh128/cache-apt-pkgs-action` from 1.4.1 to 1.4.2
- [Release notes](https://github.com/awalsh128/cache-apt-pkgs-action/releases)
- [Commits](awalsh128/cache-apt-pkgs-action@v1.4.1...v1.4.2)

---
updated-dependencies:
- dependency-name: awalsh128/cache-apt-pkgs-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Make `typing-extensions` and `sympy` required dependencies to fix PyBaMM import (#3848)

* import `typing_extensions` as optional_dependency

* Make `typing-extensions` a required dependency

* Try forward referencing for `sympy` in `IndependentVariable`

* Make `sympy` a required dependency

* Update docs for SymPy

* Import `sympy` without `have_optional_dependency`

* Import `sympy` without `TYPE_CHECKING`

* Changelog

* Update CHANGELOG.md

Co-authored-by: Agriya Khetarpal <[email protected]>

* Rearrange position in changelog

---------

Co-authored-by: Agriya Khetarpal <[email protected]>
Co-authored-by: Eric G. Kratz <[email protected]>

* Rename have_optional_dependency (#3866)

* Rename have_optional_dependency

* Change log

* Fix import

* style: pre-commit fixes

* Update pybamm/util.py

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>

* update changelog for #3862 (#3869)

* update changelog for #3862

* reword

* fix deprecation warning and check for electrode/particle diffusivity

* update test

* Edit naming for unused loop control variable (B007)

* #3883 updates to install from source (#3884)

* Disable benchmarks on PRs (#3876)

* Remove`[ latexify` extra (#3888)

* Improve Getting Started notebooks (#3750)

* improve tutorials 1 to 3

* use new syntax for plot_voltage_components

* style: pre-commit fixes

* simplify notebook by removing drive cycle

* add additional comment on dynamic_plot

* improve tutorial 5

* remove the use of solution in notebook 5, this is introduced in notebook 6

* fix minor typo

* minor text updates

* style: pre-commit fixes

* minor text updates plus extra links

* minor text updates!

* minor text updates

* remove tutorial 10 as very similar to tutorial 3 in creating models

* move and rename tutorial 11 to creating models section

* style: pre-commit fixes

* fix minor typo in current_with_time

* implement Rob & Eric's comments

* update docs links

* Valentin's comments

* style: pre-commit fixes

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric G. Kratz <[email protected]>

* chore: update pre-commit hooks (#3890)

* chore: update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.2](astral-sh/ruff-pre-commit@v0.2.2...v0.3.2)

* style: pre-commit fixes

* Update .git-blame-ignore-revs

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Agriya Khetarpal <[email protected]>

* style: pre-commit fixes

* Resolve conflicts (B904, B028, B020)

* Added a schedule on `needs-reply remove` workflow  (#3891)

* added schedule to need-reply workflow

* added schedule to need-reply workflow

---------

Co-authored-by: Arjun Verma <[email protected]>

* style: pre-commit fixes

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Valentin Sulzer <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>
Co-authored-by: Agriya Khetarpal <[email protected]>
Co-authored-by: Eric G. Kratz <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Martin Robinson <[email protected]>
Co-authored-by: Ferran Brosa Planella <[email protected]>
Co-authored-by: Santhosh <[email protected]>
@arjxn-py arjxn-py mentioned this pull request Apr 23, 2024
8 tasks
js1tr3 pushed a commit to js1tr3/PyBaMM that referenced this pull request Aug 12, 2024
* Rename have_optional_dependency

* Change log

* Fix import

* style: pre-commit fixes

* Update pybamm/util.py

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>
js1tr3 pushed a commit to js1tr3/PyBaMM that referenced this pull request Aug 12, 2024
* Enable flake8-bugbear

Fix unused-loop-control-variable (B007)

Fix function-uses-loop-variable (B023)

Fix raise-without-from-inside-except (B904)

Fix mutable-argument-default (B006)

Fix no-explicit-stacklevel (B028)

Fix get-attr-with-constant (B009)

Fix loop-variable-overrides-iterator (B020)

Fix unary-prefix-increment-decrement (B002)

Fix function-call-in-default-argument (B008)

Fix cached-instance-method (B019)

* Show exception chain (B904)

* Disable single lint check (B019)

* delay xarray.DataArray initialization

* revert example

* Bump the actions group with 1 update (pybamm-team#3861)

Bumps the actions group with 1 update: [awalsh128/cache-apt-pkgs-action](https://github.com/awalsh128/cache-apt-pkgs-action).


Updates `awalsh128/cache-apt-pkgs-action` from 1.4.1 to 1.4.2
- [Release notes](https://github.com/awalsh128/cache-apt-pkgs-action/releases)
- [Commits](awalsh128/cache-apt-pkgs-action@v1.4.1...v1.4.2)

---
updated-dependencies:
- dependency-name: awalsh128/cache-apt-pkgs-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Make `typing-extensions` and `sympy` required dependencies to fix PyBaMM import (pybamm-team#3848)

* import `typing_extensions` as optional_dependency

* Make `typing-extensions` a required dependency

* Try forward referencing for `sympy` in `IndependentVariable`

* Make `sympy` a required dependency

* Update docs for SymPy

* Import `sympy` without `have_optional_dependency`

* Import `sympy` without `TYPE_CHECKING`

* Changelog

* Update CHANGELOG.md

Co-authored-by: Agriya Khetarpal <[email protected]>

* Rearrange position in changelog

---------

Co-authored-by: Agriya Khetarpal <[email protected]>
Co-authored-by: Eric G. Kratz <[email protected]>

* Rename have_optional_dependency (pybamm-team#3866)

* Rename have_optional_dependency

* Change log

* Fix import

* style: pre-commit fixes

* Update pybamm/util.py

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>

* update changelog for pybamm-team#3862 (pybamm-team#3869)

* update changelog for pybamm-team#3862

* reword

* fix deprecation warning and check for electrode/particle diffusivity

* update test

* Edit naming for unused loop control variable (B007)

* pybamm-team#3883 updates to install from source (pybamm-team#3884)

* Disable benchmarks on PRs (pybamm-team#3876)

* Remove`[ latexify` extra (pybamm-team#3888)

* Improve Getting Started notebooks (pybamm-team#3750)

* improve tutorials 1 to 3

* use new syntax for plot_voltage_components

* style: pre-commit fixes

* simplify notebook by removing drive cycle

* add additional comment on dynamic_plot

* improve tutorial 5

* remove the use of solution in notebook 5, this is introduced in notebook 6

* fix minor typo

* minor text updates

* style: pre-commit fixes

* minor text updates plus extra links

* minor text updates!

* minor text updates

* remove tutorial 10 as very similar to tutorial 3 in creating models

* move and rename tutorial 11 to creating models section

* style: pre-commit fixes

* fix minor typo in current_with_time

* implement Rob & Eric's comments

* update docs links

* Valentin's comments

* style: pre-commit fixes

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric G. Kratz <[email protected]>

* chore: update pre-commit hooks (pybamm-team#3890)

* chore: update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.2](astral-sh/ruff-pre-commit@v0.2.2...v0.3.2)

* style: pre-commit fixes

* Update .git-blame-ignore-revs

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Agriya Khetarpal <[email protected]>

* style: pre-commit fixes

* Resolve conflicts (B904, B028, B020)

* Added a schedule on `needs-reply remove` workflow  (pybamm-team#3891)

* added schedule to need-reply workflow

* added schedule to need-reply workflow

---------

Co-authored-by: Arjun Verma <[email protected]>

* style: pre-commit fixes

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Valentin Sulzer <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Arjun Verma <[email protected]>
Co-authored-by: Agriya Khetarpal <[email protected]>
Co-authored-by: Eric G. Kratz <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Martin Robinson <[email protected]>
Co-authored-by: Ferran Brosa Planella <[email protected]>
Co-authored-by: Santhosh <[email protected]>
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Rename have_optional_dependency to import_optional_dependency
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