diff --git a/.github/workflows/ci-tests.yaml b/.github/workflows/ci-tests.yaml index 797e3e1a..434e452e 100644 --- a/.github/workflows/ci-tests.yaml +++ b/.github/workflows/ci-tests.yaml @@ -89,6 +89,48 @@ jobs: - name: Upload to Codecov uses: codecov/codecov-action@v4 + test_notebooks: + name: "Test Notebooks" + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: "3.12" + + - name: Set up poetry + uses: snok/install-poetry@v1 + + - name: Install dependencies + run: poetry install + + - name: Set up poetry + uses: snok/install-poetry@v1 + + - name: Install + run: poetry install --without docs + - name: set numba parallel flags + run: | + echo "NUMBA_NUM_THREADS=1" >> $GITHUB_ENV + + - name: Setup r2u + uses: eddelbuettel/github-actions/r2u-setup@master + + - name: install R packages + run: Rscript -e 'install.packages(c("fixest", "broom", "did2s", "clubSandwich", "wildrwolf", "ivDiag"))' + shell: bash + + - name: Install TeXlive + run: sudo apt-get update && sudo apt-get install texlive texlive-publishers texlive-science latexmk cm-super + + - name: Run notebooks + run: | + poetry install --with docs + poetry run python scripts/run_notebooks.py + + build-docs: name: "Build Docs" runs-on: ubuntu-latest diff --git a/poetry.lock b/poetry.lock index 70417569..75ef31c4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,141 @@ # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +[[package]] +name = "aiohappyeyeballs" +version = "2.4.0" +description = "Happy Eyeballs for asyncio" +optional = false +python-versions = ">=3.8" +files = [ + {file = "aiohappyeyeballs-2.4.0-py3-none-any.whl", hash = "sha256:7ce92076e249169a13c2f49320d1967425eaf1f407522d707d59cac7628d62bd"}, + {file = "aiohappyeyeballs-2.4.0.tar.gz", hash = "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2"}, +] + +[[package]] +name = "aiohttp" +version 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@@ doubleml = "^0.7.1" marginaleffects = "^0.0.10" [tool.poetry.group.docs.dependencies] +causaldata = "*" quartodoc = ">=0.7.2" jupyterlab = "^4.0.12" jupytext = "^1.16.1" +papermill = "*" +pylatex = "*" +stargazer = "*" watermark = "^2.4.3" [tool.pytest.ini_options] @@ -106,6 +110,7 @@ ignore = [ "pyfixest/multcomp.py" = ["D103"] "pyfixest/summarize.py" = ["D103"] "pyfixest/visualize.py" = ["D103"] +"scripts/*.py" = ["D103"] [tool.ruff.lint.pycodestyle] max-doc-length = 88 diff --git a/scripts/run_notebooks.py b/scripts/run_notebooks.py new file mode 100755 index 00000000..111e425e --- /dev/null +++ b/scripts/run_notebooks.py @@ -0,0 +1,55 @@ +"""Script to run all notebooks example notebooks. + +Taken from: https://github.com/pymc-labs/pymc-marketing/blob/main/scripts/run_notebooks/runner.py +""" + +import logging +from pathlib import Path + +import papermill +from joblib import Parallel, delayed +from tqdm import tqdm + +KERNEL_NAME: str = "python3" +DOCS = Path("docs") +NOTEBOOKS: list[Path] = [ + # DOCS / "compare-fixest-pyfixest.ipynb", # needs R + DOCS / "difference-in-differences.ipynb", + DOCS / "marginaleffects.ipynb", + DOCS / "quickstart.ipynb", + DOCS / "replicating-the-effect.ipynb", + # DOCS / "stargazer.ipynb", # failing notebook +] + + +def setup_logging() -> None: + logging.basicConfig( + level=logging.INFO, + format="%(asctime)s - %(name)s - %(levelname)s - %(message)s", + ) + + +def get_cwd_from_notebook_path(notebook_path: Path) -> str: + return str(notebook_path).rsplit("/", 1)[0] + + +def run_notebook(notebook_path: Path) -> None: + cwd = get_cwd_from_notebook_path(notebook_path) + logging.info(f"Running notebook: {notebook_path.name}") + papermill.execute_notebook( + input_path=str(notebook_path), + output_path=None, + kernel_name=KERNEL_NAME, + cwd=cwd, + ) + + +if __name__ == "__main__": + setup_logging() + logging.info("Starting notebook runner") + logging.info(f"Notebooks to run: {NOTEBOOKS}") + Parallel(n_jobs=-1)( + delayed(run_notebook)(notebook_path) for notebook_path in tqdm(NOTEBOOKS) + ) + + logging.info("Notebooks run successfully!")