diff --git a/Dockerfile b/Dockerfile index 021657535..f0a1c0470 100644 --- a/Dockerfile +++ b/Dockerfile @@ -24,9 +24,9 @@ USER $MAMBA_USER ARG MAMBA_DOCKERFILE_ACTIVATE=1 RUN micromamba install -y -c conda-forge -c bioconda -cbiocore -c etetoolkit \ python biopython pandas psutil pysam scons seaborn zlib pyyaml scikit-learn \ - mafft circlify ete3 # ete_toolchain + mafft circlify ete3 RUN pip install colored-traceback dendropy levenshtein -ENV XDG_RUNTIME_DIR=/tmp/xdgrd # this xdg runtime dir is for plotting (i think it's required for headless/xvfb-run) +ENV XDG_RUNTIME_DIR=/tmp/xdgrd RUN mkdir /tmp/xdgrd RUN chmod 0700 /tmp/xdgrd COPY --chown=$MAMBA_USER:$MAMBA_USER_GID . /partis