From e87306c970b64461ee7798c104c7e41658bd3a1d Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 09:54:20 +0200
Subject: [PATCH 01/15] Add GitHub action for vagrant up, bsaed on
 ubuntu-latest

This should probably fail
---
 .github/workflows/build.yml | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)
 create mode 100644 .github/workflows/build.yml

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
new file mode 100644
index 0000000..67a3e58
--- /dev/null
+++ b/.github/workflows/build.yml
@@ -0,0 +1,27 @@
+name: Build (provision)
+on:
+  pull_request:
+    types: [ready_for_review]
+jobs:
+  vagrant-up:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Cache Vagrant boxes
+      uses: actions/cache@v2
+      with:
+        path: ~/.vagrant.d/boxes
+        key: ${{ runner.os }}-vagrant-${{ hashFiles('Vagrantfile') }}
+        restore-keys: |
+          ${{ runner.os }}-vagrant-
+    - name: Show Vagrant version
+      run: vagrant --version
+
+    - name: Run vagrant up
+      run: vagrant up
+
+    - name: ssh into box after boot
+      run: vagrant ssh -c "echo 'hello world!'"
+        

From 4384480eb9c7a4786c0d887d995d31e79be6d981 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 09:58:36 +0200
Subject: [PATCH 02/15] Migrate to macos-10.15

---
 .github/workflows/build.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 67a3e58..d94fb94 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -4,7 +4,7 @@ on:
     types: [ready_for_review]
 jobs:
   vagrant-up:
-    runs-on: ubuntu-latest
+    runs-on: macos-10.15
 
     steps:
     - uses: actions/checkout@v2

From e19832fe6b1e86997fb51e27d6e174181feaa8de Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 10:26:02 +0200
Subject: [PATCH 03/15] Source OpenFOAM bashrc in install-openfoam.sh

---
 provisioning/install-openfoam.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/provisioning/install-openfoam.sh b/provisioning/install-openfoam.sh
index f34d403..0a0e664 100644
--- a/provisioning/install-openfoam.sh
+++ b/provisioning/install-openfoam.sh
@@ -9,7 +9,7 @@ sudo apt-get install -y openfoam2012-dev
 # Enable OpenFOAM by default and apply now:
 echo ". /usr/lib/openfoam/openfoam2012/etc/bashrc" >> ~/.bashrc
 # shellcheck source=/dev/null
-# . /usr/lib/openfoam/openfoam2012/etc/bashrc
+. /usr/lib/openfoam/openfoam2012/etc/bashrc
 
 # Get the OpenFOAM-preCICE adapter
 if [ ! -d "openfoam-adapter/" ]; then

From 284d9cfeda76e1a816b7c48db1c13aa6e7c59fb5 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 10:29:48 +0200
Subject: [PATCH 04/15] Add actions to package and upload artifacts

---
 .github/workflows/build.yml | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index d94fb94..b9c73ad 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -22,6 +22,13 @@ jobs:
     - name: Run vagrant up
       run: vagrant up
 
-    - name: ssh into box after boot
-      run: vagrant ssh -c "echo 'hello world!'"
+    - name: Package Vagrant box
+      run: vagrant package --base "preCICE-VM" --output preCICE.box
+
+    - name: Upload artifacts
+      uses: actions/upload-artifact@v2
+      with:
+          name: precice-vagrant-box
+          path: |
+            preCICE.box
         

From 5c8bbb6a0f031c8a297fb3113fe01b93ebd9ec01 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 10:33:15 +0200
Subject: [PATCH 05/15] Configure artifact retention time to 1 week

---
 .github/workflows/build.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index b9c73ad..18adf6e 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -29,6 +29,6 @@ jobs:
       uses: actions/upload-artifact@v2
       with:
           name: precice-vagrant-box
-          path: |
-            preCICE.box
+          path: preCICE.box
+          retention-days: 7
         

From 9412b9f56983acd1dc4cc72fcb21724642f72ea7 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 10:38:28 +0200
Subject: [PATCH 06/15] Add step to generate sha256sum

---
 .github/workflows/build.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 18adf6e..7343adc 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -25,6 +25,9 @@ jobs:
     - name: Package Vagrant box
       run: vagrant package --base "preCICE-VM" --output preCICE.box
 
+    - name: Generate Vagrant box hash
+      run: sha256sum preCICE.box
+
     - name: Upload artifacts
       uses: actions/upload-artifact@v2
       with:

From 115bf7e4412184ec0a90f4f58a85594aac8de752 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 11:10:51 +0200
Subject: [PATCH 07/15] OpenFOAM: instead of loading the environment (which
 crashes), use an openfoam2012 session

---
 provisioning/install-openfoam.sh | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/provisioning/install-openfoam.sh b/provisioning/install-openfoam.sh
index 0a0e664..64c6a5f 100644
--- a/provisioning/install-openfoam.sh
+++ b/provisioning/install-openfoam.sh
@@ -6,10 +6,8 @@ wget -q -O - https://dl.openfoam.com/add-debian-repo.sh | sudo bash
 
 # Install OpenFOAM v2012:
 sudo apt-get install -y openfoam2012-dev
-# Enable OpenFOAM by default and apply now:
+# Enable OpenFOAM by default:
 echo ". /usr/lib/openfoam/openfoam2012/etc/bashrc" >> ~/.bashrc
-# shellcheck source=/dev/null
-. /usr/lib/openfoam/openfoam2012/etc/bashrc
 
 # Get the OpenFOAM-preCICE adapter
 if [ ! -d "openfoam-adapter/" ]; then
@@ -18,5 +16,5 @@ fi
 (
     cd openfoam-adapter
     git pull
-    ./Allwmake
+    openfoam2012 ./Allwmake
 )

From c50cb5aca3c7d1fa73dcbbcd71c4cad11fecf8fa Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 11:32:37 +0200
Subject: [PATCH 08/15] Rename workflow

---
 .github/workflows/build.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 7343adc..b9ed492 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -1,4 +1,4 @@
-name: Build (provision)
+name: Build and package
 on:
   pull_request:
     types: [ready_for_review]

From 8ae3f23ffe2006e2be7050c23004fe87e6e3ce33 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 12:17:03 +0200
Subject: [PATCH 09/15] Enable cleanup by default

---
 Vagrantfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Vagrantfile b/Vagrantfile
index 9dadf78..8d949da 100644
--- a/Vagrantfile
+++ b/Vagrantfile
@@ -50,7 +50,7 @@ Vagrant.configure("2") do |config|
   config.vm.provision "file", source: "provisioning/get-started.desktop", destination: "~/Desktop/get-started.desktop"
 
   # Pre-packaging steps
-  # config.vm.provision "shell", path: "provisioning/cleanup.sh", privileged: false
+  config.vm.provision "shell", path: "provisioning/cleanup.sh", privileged: false
   # Add the default Vagrant insecure public key to the authorized keys
   config.vm.provision "file", source: "provisioning/vagrant.pub", destination: "~/.ssh/vagrant.pub"
   config.vm.provision "shell", inline: <<-SHELL

From 9ffd870fc9a3311aa8b91c5741cce141e6164062 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 12:22:27 +0200
Subject: [PATCH 10/15] Switch from sha256sum to md5sum

---
 .github/workflows/build.yml | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index b9ed492..c3ef2ca 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -16,6 +16,10 @@ jobs:
         key: ${{ runner.os }}-vagrant-${{ hashFiles('Vagrantfile') }}
         restore-keys: |
           ${{ runner.os }}-vagrant-
+
+    - name: Generate Vagrantfile MD5 hash
+      run: md5sum Vagrantfile
+
     - name: Show Vagrant version
       run: vagrant --version
 
@@ -25,8 +29,8 @@ jobs:
     - name: Package Vagrant box
       run: vagrant package --base "preCICE-VM" --output preCICE.box
 
-    - name: Generate Vagrant box hash
-      run: sha256sum preCICE.box
+    - name: Generate Vagrant box MD5 hash
+      run: md5sum preCICE.box
 
     - name: Upload artifacts
       uses: actions/upload-artifact@v2

From de4e3af21ee836d7d75c73e24e4119b0bb0d2a44 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 12:29:09 +0200
Subject: [PATCH 11/15] sha256sum for macOS

---
 .github/workflows/build.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index c3ef2ca..8131f47 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -17,8 +17,8 @@ jobs:
         restore-keys: |
           ${{ runner.os }}-vagrant-
 
-    - name: Generate Vagrantfile MD5 hash
-      run: md5sum Vagrantfile
+    - name: Generate Vagrantfile SHA256 hash
+      run: shasum -a 256 Vagrantfile
 
     - name: Show Vagrant version
       run: vagrant --version
@@ -29,8 +29,8 @@ jobs:
     - name: Package Vagrant box
       run: vagrant package --base "preCICE-VM" --output preCICE.box
 
-    - name: Generate Vagrant box MD5 hash
-      run: md5sum preCICE.box
+    - name: Generate Vagrant box SHA256 hash
+      run: shasum -a 256 preCICE.box
 
     - name: Upload artifacts
       uses: actions/upload-artifact@v2

From 7ec683a37b3cef53298cb6b9d93f0657a3e737ec Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 12:30:56 +0200
Subject: [PATCH 12/15] Remove debugging shasum step

---
 .github/workflows/build.yml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 8131f47..2039489 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -17,9 +17,6 @@ jobs:
         restore-keys: |
           ${{ runner.os }}-vagrant-
 
-    - name: Generate Vagrantfile SHA256 hash
-      run: shasum -a 256 Vagrantfile
-
     - name: Show Vagrant version
       run: vagrant --version
 

From e3b7b7bfa15144129973d9a9997f50b82d30bfdf Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 14:22:53 +0200
Subject: [PATCH 13/15] Remove downloaded solver archives after extracting

---
 provisioning/install-calculix.sh | 1 +
 provisioning/install-su2.sh      | 4 +++-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/provisioning/install-calculix.sh b/provisioning/install-calculix.sh
index a90073c..3729e87 100644
--- a/provisioning/install-calculix.sh
+++ b/provisioning/install-calculix.sh
@@ -7,6 +7,7 @@ sudo apt-get install -y libarpack2-dev libspooles-dev libyaml-cpp-dev
 # Install CalculiX
 wget --quiet http://www.dhondt.de/ccx_2.16.src.tar.bz2
 tar xvjf ccx_2.16.src.tar.bz2
+rm -fv ccx_2.16.src.tar.bz2
 
 # Get the CalculiX-preCICE adapter
 if [ ! -d "calculix-adapter/" ]; then
diff --git a/provisioning/install-su2.sh b/provisioning/install-su2.sh
index 358e566..0e763a2 100644
--- a/provisioning/install-su2.sh
+++ b/provisioning/install-su2.sh
@@ -2,7 +2,9 @@
 set -ex
 
 # Get SU2 6.0.0 from GitHub
-wget --quiet https://github.com/su2code/SU2/archive/v6.0.0.tar.gz && tar -xzf v6.0.0.tar.gz
+wget --quiet https://github.com/su2code/SU2/archive/v6.0.0.tar.gz
+tar -xzf v6.0.0.tar.gz
+rm -fv v6.0.0.tar.gz
 
 # Add SU2 to PATH and apply.
 # We first export to a separate script, so that we can load it here (non-interactive shell).

From 942b403cbb96f9ed31d0d77eb6eff6ba36920deb Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 14:39:06 +0200
Subject: [PATCH 14/15] Replace ~ by HOME env variable for portability

---
 provisioning/cleanup.sh                   | 2 +-
 provisioning/install-calculix.sh          | 2 +-
 provisioning/install-config-visualizer.sh | 2 +-
 provisioning/install-dealii.sh            | 2 +-
 provisioning/install-paraview.sh          | 2 +-
 provisioning/install-su2.sh               | 4 ++--
 6 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/provisioning/cleanup.sh b/provisioning/cleanup.sh
index bbc69eb..c4643bb 100644
--- a/provisioning/cleanup.sh
+++ b/provisioning/cleanup.sh
@@ -5,4 +5,4 @@ set -ex
 sudo apt-get clean
 
 # Cleanup all object files from compilation
-find /home/vagrant/ -type f -name '*.o' -exec rm -fv {} \;
+find ${HOME} -type f -name '*.o' -exec rm -fv {} \;
diff --git a/provisioning/install-calculix.sh b/provisioning/install-calculix.sh
index 3729e87..e75730b 100644
--- a/provisioning/install-calculix.sh
+++ b/provisioning/install-calculix.sh
@@ -20,4 +20,4 @@ fi
 )
 
 # Add the CalculiX adapter to PATH
-echo "export PATH=\"~/calculix-adapter/bin:\${PATH}\"" >>~/.bashrc
+echo "export PATH=\"\${HOME}/calculix-adapter/bin:\${PATH}\"" >>~/.bashrc
diff --git a/provisioning/install-config-visualizer.sh b/provisioning/install-config-visualizer.sh
index 3d63407..06359ac 100644
--- a/provisioning/install-config-visualizer.sh
+++ b/provisioning/install-config-visualizer.sh
@@ -8,7 +8,7 @@ fi
 pip3 install --user -e config-visualizer
 
 # Add the config-visualizer to PATH
-echo "export PATH=\"~/config-visualizer/bin:\${PATH}\"" >>~/.bashrc
+echo "export PATH=\"\${HOME}/config-visualizer/bin:\${PATH}\"" >>~/.bashrc
 
 # By default, there is no `python` executable, there is only `python3`,
 # which causes issues to the config-visualizer
diff --git a/provisioning/install-dealii.sh b/provisioning/install-dealii.sh
index 07e4355..ea3ce00 100644
--- a/provisioning/install-dealii.sh
+++ b/provisioning/install-dealii.sh
@@ -17,4 +17,4 @@ fi
 )
 
 # Add the deal.II adapter to PATH
-echo "export PATH=\"~/dealii-adapter:\${PATH}\"" >>~/.bashrc
+echo "export PATH=\"\${HOME}/dealii-adapter:\${PATH}\"" >>~/.bashrc
diff --git a/provisioning/install-paraview.sh b/provisioning/install-paraview.sh
index af7ab04..2d07842 100644
--- a/provisioning/install-paraview.sh
+++ b/provisioning/install-paraview.sh
@@ -7,5 +7,5 @@ if [ ! -d "paraview" ]; then
     wget --no-check-certificate --quiet -O - "${PARAVIEW_URL}" | tar -xz -C paraview
     ln -sf ~/paraview/ParaView-5.8.1-MPI-Linux-Python3.7-64bit/bin/paraview ~/Desktop/
     # Add ParaView to PATH
-    echo "export PATH=\"~/paraview/ParaView-5.8.1-MPI-Linux-Python3.7-64bit/bin:\${PATH}\"" >>~/.bashrc
+    echo "export PATH=\"\${HOME}/paraview/ParaView-5.8.1-MPI-Linux-Python3.7-64bit/bin:\${PATH}\"" >>~/.bashrc
 fi
diff --git a/provisioning/install-su2.sh b/provisioning/install-su2.sh
index 0e763a2..006eca7 100644
--- a/provisioning/install-su2.sh
+++ b/provisioning/install-su2.sh
@@ -9,13 +9,13 @@ rm -fv v6.0.0.tar.gz
 # Add SU2 to PATH and apply.
 # We first export to a separate script, so that we can load it here (non-interactive shell).
 {
-    echo "export SU2_HOME=\"/home/vagrant/SU2-6.0.0\""
+    echo "export SU2_HOME=\"\${HOME}/SU2-6.0.0\""
     echo "export SU2_RUN=\"\${SU2_HOME}/SU2_CFD/bin\""
     echo "export PATH=\"\${SU2_RUN}:\${PATH}\""
     echo "export PYTHONPATH=\"\${SU2_RUN}:\${PYTHONPATH}\""
 } >> ~/.su2-bashrc
 
-echo ". ~/.su2-bashrc" >> ~/.bashrc
+echo ". \${HOME}/.su2-bashrc" >> ~/.bashrc
 # shellcheck source=/dev/null
 . ~/.su2-bashrc
 

From 1109e82ce2628a3f4a5078b903caba0aad4e7617 Mon Sep 17 00:00:00 2001
From: Gerasimos Chourdakis <makishourdakis@gmail.com>
Date: Wed, 28 Apr 2021 14:43:06 +0200
Subject: [PATCH 15/15] Fix shellcheck

---
 provisioning/cleanup.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/provisioning/cleanup.sh b/provisioning/cleanup.sh
index c4643bb..91dccf0 100644
--- a/provisioning/cleanup.sh
+++ b/provisioning/cleanup.sh
@@ -5,4 +5,4 @@ set -ex
 sudo apt-get clean
 
 # Cleanup all object files from compilation
-find ${HOME} -type f -name '*.o' -exec rm -fv {} \;
+find "${HOME}" -type f -name '*.o' -exec rm -fv {} \;