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Cellpose integration #14

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pr4deepr opened this issue May 28, 2023 · 0 comments

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pr4deepr commented May 28, 2023

PT-BIOP has a nice Fiji cellpose wrapper that calls cellpose from Fiji: https://github.com/BIOP/ijl-utilities-wrappers
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Points to consider:

Instructions to install cellpose;
- links to python environment config
- video tutorial?
Rescaling of image done in GAT for Stardist prediction. Determine the radius we pass to cellpose?
Add test macro to test different options in Cellpose??

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