From c008ae838fc25786dbd6a3c7f8e9a365f675a6a8 Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Thu, 2 May 2024 10:42:50 -0700 Subject: [PATCH] Upgrade Python to 3.10; upgrade core dependencies --- .github/workflows/ci.yml | 2 +- hypernetx/classes/hyp_view.py | 5 + poetry.lock | 2051 ++++++++++++++++----------------- pyproject.toml | 17 +- tox.ini | 14 +- 5 files changed, 1020 insertions(+), 1069 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d334589a..ce188394 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -24,7 +24,7 @@ jobs: strategy: matrix: os: [ubuntu-latest, macos-latest] - python: ['3.8', '3.9', '3.10', '3.11'] + python: ['3.10', '3.11', '3.12'] runs-on: ${{ matrix.os }} steps: diff --git a/hypernetx/classes/hyp_view.py b/hypernetx/classes/hyp_view.py index d1814a9d..f9d57a2d 100644 --- a/hypernetx/classes/hyp_view.py +++ b/hypernetx/classes/hyp_view.py @@ -98,6 +98,11 @@ def to_dataframe(self): non_user_defined_items = list( set(self._items).difference(self.properties.index) ) + + # skip combining df and non_user_defined_items if non_user_defined_items is empty + if not non_user_defined_items: + return df.loc[list(self._items)] + default_data = self.property_store.default_properties_df() non_user_defined_properties = pd.DataFrame( index=non_user_defined_items, data=default_data diff --git a/poetry.lock b/poetry.lock index 45436fe7..fd68f767 100644 --- a/poetry.lock +++ b/poetry.lock @@ -11,6 +11,21 @@ files = [ {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, ] +[[package]] +name = "ansi2html" +version = "1.9.1" +description = "Convert text with ANSI color codes to HTML or to LaTeX" +optional = false +python-versions = ">=3.7" +files = [ + {file = "ansi2html-1.9.1-py3-none-any.whl", hash = "sha256:29ccdb1e83520d648ebdc9c9544059ea4d424ecc33d3ef723657f7f5a9ae5225"}, + {file = "ansi2html-1.9.1.tar.gz", hash = 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igraph = "^0.11.4" [tool.poetry.group.widget] optional = true [tool.poetry.group.widget.dependencies] -hnxwidget = "^0.1.1b3" jupyter-contrib-nbextensions = "^0.7.0" -jupyter-nbextensions-configurator = "^0.6.3" +ipywidgets = "7.7.5" +notebook = "6.4.12" +traitlets = "5.9.0" +concepts = "^0.9.2" +jupyter-dash = "^0.4.2" +dash = "^2.16.1" [tool.poetry.group.tutorials] optional = true diff --git a/tox.ini b/tox.ini index 27b3354f..d753703a 100644 --- a/tox.ini +++ b/tox.ini @@ -9,17 +9,15 @@ skip_missing_interpreters = true envlist = lint notebooks-test - py38 - py39 py310 py311 + py312 [gh-actions] python = - 3.8: py38 - 3.9: py39, lint, notebooks-test 3.10: py310 - 3.11: py311 + 3.11: py311, lint, notebooks-test + 3.12: py312 [testenv] description = run tests @@ -34,7 +32,7 @@ commands = [testenv:notebooks-tests] description = run tests on jupyter notebooks -basepython = python3.9 +basepython = python3.11 commands_pre = poetry install --with test,tutorials,widget commands = @@ -42,7 +40,7 @@ commands = [testenv:lint] description = run linters -basepython = python3.9 +basepython = python3.11 commands_pre = poetry install --with lint commands = @@ -53,7 +51,7 @@ commands = [testenv:build-docs] description = build documentation -basepython = python3.9 +basepython = python3.11 allowlist_externals = make, poetry commands_pre = poetry install --with docs