From d88498e9f9b4fa9d3f2b47014f1a2d4e488e4b2c Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Sat, 18 May 2024 14:19:07 -0700 Subject: [PATCH 01/10] Update github workflow --- .github/workflows/publish-to-pypi.yml | 20 +++++++++++--------- 1 file changed, 11 insertions(+), 9 deletions(-) diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml index b31cbfb8..78a5aff6 100644 --- a/.github/workflows/publish-to-pypi.yml +++ b/.github/workflows/publish-to-pypi.yml @@ -1,5 +1,7 @@ -# This workflow will upload a Python Package using Twine when a release is created -# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries +# This workflow uses the Github Action, poetry-publish. +# It will build the HNX package into a wheel and sdist and then publish those artifacts to TestPyPi and PyPi using poetry. +# Documentation for this action is at: https://github.com/marketplace/actions/publish-python-poetry-package +# For building and publishing to PyPi in Github Workflows, see https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries # This workflow uses actions that are not certified by GitHub. # They are provided by a third-party and are governed by @@ -32,13 +34,13 @@ jobs: - run: echo "Building wheel from tag ${{ github.ref_name }}" - uses: actions/checkout@v4 - # - name: Build and publish distribution 📦 to Test PyPI - # uses: JRubics/poetry-publish@v2.0 - # with: - # python_version: "3.11" - # pypi_token: ${{ secrets.TEST_PYPI_API_TOKEN }} - # repository_name: "testpypi" - # repository_url: "https://test.pypi.org/legacy/" + - name: Build and publish distribution 📦 to Test PyPI + uses: JRubics/poetry-publish@v2.0 + with: + python_version: "3.11" + pypi_token: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository_name: "testpypi" + repository_url: "https://test.pypi.org/legacy/" - name: Build and publish distribution 📦 to PyPI uses: JRubics/poetry-publish@v2.0 From 07f7adaba778c329508c765dac724f3e610f1bfe Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Sat, 18 May 2024 14:28:37 -0700 Subject: [PATCH 02/10] Remove poetry.lock --- .gitignore | 1 + poetry.lock | 4278 --------------------------------------------------- 2 files changed, 1 insertion(+), 4278 deletions(-) delete mode 100644 poetry.lock diff --git a/.gitignore b/.gitignore index 891e468e..4a19478d 100644 --- a/.gitignore +++ b/.gitignore @@ -41,3 +41,4 @@ cov.syspath.txt *.whl *dogsAndcats* pytest_notebooks.xml +poetry.lock diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index b0fb80b9..00000000 --- a/poetry.lock +++ /dev/null @@ -1,4278 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. - 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{file = "widgetsnbextension-3.6.6.tar.gz", hash = "sha256:46f4e3cb2d451bbd6141a13696d6ba17c9b5f50645dca9cfd26fe9644d5a00e1"}, -] - -[package.dependencies] -notebook = ">=4.4.1" - -[[package]] -name = "zipp" -version = "3.18.1" -description = "Backport of pathlib-compatible object wrapper for zip files" -optional = false -python-versions = ">=3.8" -files = [ - {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"}, - {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"}, -] - -[package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] - -[metadata] -lock-version = "2.0" -python-versions = "^3.10,<=3.12.3" -content-hash = "436f5b6da2478dfa414290950beff2f8511dce920631ac1b71e18822de9b17d9" From c2d87ba2f1abc84bda5d158a40626d5490338ea6 Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Sat, 18 May 2024 14:31:38 -0700 Subject: [PATCH 03/10] Make decorator dependency loosely constrained --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 0c844f43..b4b30939 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,7 +28,7 @@ pandas = ">=2.2.2" scikit-learn = ">=1.4.2" celluloid = ">=0.2.0" igraph = ">=0.11.4" -decorator = "^5.1.1" +decorator = ">=5.1.1" [tool.poetry.group.widget] optional = true From 89299d83ffb8837b5e9e45c6915f628bd7a6deef Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Sat, 18 May 2024 15:05:58 -0700 Subject: [PATCH 04/10] Remove celluloid, igraph from requirements.txt --- requirements.txt | 2 -- 1 file changed, 2 deletions(-) diff --git a/requirements.txt b/requirements.txt index 1f0d91d1..533f1952 100644 --- a/requirements.txt +++ b/requirements.txt @@ -11,7 +11,6 @@ beautifulsoup4==4.12.3 black==24.4.2 bleach==6.1.0 cachetools==5.3.3 -celluloid==0.2.0 certifi==2024.2.2 cffi==1.16.0 cfgv==3.4.0 @@ -38,7 +37,6 @@ fonttools==4.51.0 h11==0.14.0 identify==2.5.36 idna==3.7 -igraph==0.11.4 imagesize==1.4.1 iniconfig==2.0.0 ipykernel==6.29.4 From 69a610f225497653db96b7219d0971e7dd2220ef Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Sat, 18 May 2024 15:41:50 -0700 Subject: [PATCH 05/10] Remove CI scripts from Makefile, Readme --- Makefile | 81 ++++++++++++-------------------------------------- README.md | 88 ++++++++++++++++++++++++------------------------------- 2 files changed, 56 insertions(+), 113 deletions(-) diff --git a/Makefile b/Makefile index 9d9dd79a..b40349d4 100644 --- a/Makefile +++ b/Makefile @@ -4,7 +4,7 @@ PYTHON3 = python3 ############# Manage Environments ############# -## Environment using Pip +## Create environment using Pip .PHONY: venv venv: clean-venv @$(PYTHON3) -m venv $(VENV); @@ -19,19 +19,28 @@ install: @$(PYTHON3) -m pip install -e . @$(PYTHON3) -m pip install -r requirements.txt -## Environment using Poetry +## Create environment using Poetry -.PHONY: develop -develop: clean-poetry-env - poetry shell +.PHONY: install-with-poetry +install-with-poetry: + poetry env remove --all poetry install --with test - +## Create new requirements.txt from current poetry environment .PHONY: requirements.txt requirements.txt: poetry export --format requirements.txt --output requirements.txt --without-hashes --with test,widget,tutorials,docs -############# Running Tests, linters ############# +############# Tutorials ############# +.PHONY: tutorials +tutorials: + jupyter notebook tutorials + +.PHONY: clean +clean: + rm -rf .out .pytest_cache .tox *.egg-info dist build _build pytest.xml pytest_notebooks.xml .coverage + +############# Running Tests, linters, formatters ############# ## Tests .PHONY: test @@ -45,37 +54,12 @@ test-core: coverage report -m -## Tests using Tox +## Run test on Tox framework ## Includes linting, running tests on jupyter notebooks .PHONY: test-tox test-tox: @$(PYTHON3) -m tox --parallel -### Tests using Poetry + Tox -### Used by Bamboo CI Pipeline, Github Workflows CI Pipeline - -.PHONY: test-ci-stash -test-ci-stash: install-poetry-stash run-poetry-tox clean-poetry-env - -.PHONY: build-docs-stash -build-docs-stash: install-poetry-stash run-build-docs clean-poetry-env - -.PHONY: install-poetry-stash -install-poetry-stash: - pip install poetry==1.8.2 tox - -.PHONY: run-poetry-tox -run-poetry-tox: - tox --parallel - -.PHONY: run-build-docs -run-build-docs: - tox -e build-docs - -.PHONY: clean-poetry-env -clean-poetry-env: - poetry env remove --all - ## Lint .PHONY: lint lint: pylint flake8 @@ -89,37 +73,8 @@ pylint: flake8: @$(PYTHON3) -m flake8 hypernetx --exit-zero +## precommit hooks that include formatter (Black) .PHONY: pre-commit pre-commit: pre-commit install pre-commit run --all-files - -############# Packaging and Publishing to PyPi ############# -## Uses Poetry to manage packaging and publishing -## Targets are included as a backup in case the Github Workflows CI can't publish to PyPi and we need to do it manually -## Assumes the following environment variables are set: PYPI_API_TOKEN -.PHONY: publish-to-pypi -publish-to-pypi: build check-long-desc - @echo "Publishing to PyPi" - poetry config pypi-token.pypi PYPI_API_TOKEN - poetry config repositories.pypi https://pypi.org/simple/ - poetry publish --dry-run - #poetry publish - -.PHONY: build -build: clean - poetry build - -.PHONY: check-long-desc -check-long-desc: - poetry run pip install twine - poetry run twine check dist/* - -############# Misc ############# -.PHONY: tutorials -tutorials: - jupyter notebook tutorials - -.PHONY: clean -clean: - rm -rf .out .pytest_cache .tox *.egg-info dist build _build pytest.xml pytest_notebooks.xml .coverage diff --git a/README.md b/README.md index 55e60eaf..ab3c519e 100644 --- a/README.md +++ b/README.md @@ -72,37 +72,37 @@ Google Colab Open In Colab Basic 1 - HNX Basics -
+
Open In Colab Basic 2 - Visualization Methods -
+
Open In Colab Basic 3 - LesMis Case Study -
+
Open In Colab Basic 4 - LesMis Visualizations-Book Tour -
+
Open In Colab Basic 5 - HNX attributed hypergraph -
+
Open In Colab Basic 6 - Hypergraph Arithmetic.ipynb -
+
Jupyter Notebooks @@ -115,7 +115,7 @@ Installation The recommended installation method for most users is to create a virtual environment and install HyperNetX from PyPi. -HyperNetX may be cloned or forked from [Github](https://github.com/pnnl/HyperNetX). +HyperNetX may be cloned or forked from [GitHub](https://github.com/pnnl/HyperNetX). Prerequisites ------------- @@ -168,7 +168,7 @@ To deactivate your environment, use: Installing HyperNetX ==================== -Regardless of how you install HyperNetX, ensure that your environment is activated and that you are running Python >=3.8. +Regardless of how you install HyperNetX, ensure that your environment is activated and that you are running Python >=3.10. Installing from PyPi @@ -261,6 +261,9 @@ Install support for testing ```shell poetry install --with test +# activate your virtual environment created by poetry +poetry shell + # run tests python -m pytest @@ -275,9 +278,12 @@ open htmlcov/index.html Install support for tutorials ----------------------------- -``` +```shell poetry install --with tutorials +# activate your virtual environment created by poetry +poetry shell + # open Jupyter notebooks in a browser make tutorials ``` @@ -291,8 +297,10 @@ HyperNetX uses a number of tools to maintain code quality: Before using these tools, ensure that you install Pylint in your environment: -``` +```shell poetry install --with lint +# activate your virtual environment created by poetry +poetry shell ``` Pylint @@ -325,13 +333,30 @@ Black black hypernetx ``` +Pre-commit +--------- + +Use the [pre-commit framework](https://pre-commit.com/) to automatically point out issues and resolve those issues before code review. +It is highly recommended to install pre-commit in your development environment so that issues with your code can be found before you submit a +pull request. More importantly, using pre-commit will automatically format your code changes so that they pass the CI build. For example, pre-commit will +automatically run the formatter Black on your code changes. + +```shell +pre-commit install + +# Once installed, pre-commit will be triggered every time you make a commit in your environment +``` + Documentation ------------- Build and view documentation locally: -``` +```shell poetry install --with docs +# activate your virtual environment created by poetry +poetry shell + cd docs make html open docs/build/html/index.html @@ -340,7 +365,7 @@ open docs/build/html/index.html When editing documentation, you can auto-rebuild the documentation locally so that you can view your document changes live on the browser without having to rebuild every time you have a change. -``` +```shell cd docs make livehtml ``` @@ -360,49 +385,12 @@ Click on `http://127.0.0.1:8000/install.html` to open the docs on your browser. you change a document file, it will automatically render on your browser, allowing you to verify your document changes. -Continuous Integration -====================== - -This project runs Continuous Integration (CI) using GitHub Actions. Normally, CI runs -on pull requests, pushes to certain branches, and other events. - -Maintainers of the GitHub repository can manually trigger CI using [GitHub CLI](https://cli.github.com/). See instructions below on how to manually trigger CI on GitHub Actions: - -```commandline -# login to Github -gh auth login --with-token < ~/.ssh/tokens/ - -# Trigger CI -gh workflow run ci.yml --repo pnnl/HyperNetX --ref --field triggeredBy="" - -# Get the status of the workflow -gh run list --workflow=ci.yml --repo pnnl/HyperNetX -``` - - -Versioning -========== - -This project uses [`commitizen`](https://github.com/commitizen-tools/commitizen) to manage versioning. -The files where "version" will be updated are listed in the '.cz.toml' file. To create a new version and the associated tag, -run the following commands: - -```shell -# Install commitizen tool to environment -pip install commitizen - -# Updates version; values for '--increment' can be MAJOR, MINOR, or PATCH -# Autocreates a tag and commit for the updated version -cz bump --increment MAJOR --dry-run -cz bump --increment MAJOR -``` - Notice ====== This material was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor the United States Department of Energy, nor Battelle, nor any of their employees, nor any jurisdiction or organization that has cooperated in the development of these materials, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness or any information, apparatus, product, software, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof, or Battelle Memorial Institute. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. -
+ 
    PACIFIC NORTHWEST NATIONAL LABORATORY
    operated by

From b28396b70b828d0c4aecb2bb8d5aa2a310cbb46e Mon Sep 17 00:00:00 2001
From: Mark Bonicillo 
Date: Wed, 29 May 2024 11:48:40 -0700
Subject: [PATCH 06/10] Modify constraint python version

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index b4b30939..b573a716 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -22,7 +22,7 @@ packages = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.10,<=3.12.3"
+python = ">=3.10,<4.0.0"
 networkx = ">=3.3"
 pandas = ">=2.2.2"
 scikit-learn = ">=1.4.2"

From 70d776282708095c54e92857f7dc09142a38c025 Mon Sep 17 00:00:00 2001
From: Mark Bonicillo 
Date: Wed, 29 May 2024 12:15:12 -0700
Subject: [PATCH 07/10] Modify documentation CI workflow

---
 .github/workflows/documentation.yml | 23 ++++++++++++++++++++---
 1 file changed, 20 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml
index aeee0efb..7ddf5c62 100644
--- a/.github/workflows/documentation.yml
+++ b/.github/workflows/documentation.yml
@@ -1,14 +1,31 @@
-name: Docs
+name: Documentation
 
-on: [push, workflow_dispatch]
+on:
+  push:
+    branches: [ master, develop, release/** ]
+  pull_request:
+    types: [ opened, synchronize, reopened ]
+  workflow_dispatch:
+    inputs:
+      triggeredBy:
+        description: 'Name of team member who is manually triggering this workflow'
+        required: true
 
 permissions:
     contents: write
 
 jobs:
-  test:
+  build-docs:
     runs-on: ubuntu-latest
     steps:
+      - run: |
+          echo "This workflow was triggered by: $TRIGGER_PERSON"
+        env:
+          TRIGGER_PERSON: ${{ inputs.triggeredBy }}
+      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
+      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
+      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
+
       #----------------------------------------------
       #       check-out repo and set-up python
       #----------------------------------------------

From 7661c9914e261981b4bdc13455e1f559fe9bd3fa Mon Sep 17 00:00:00 2001
From: Mark Bonicillo 
Date: Wed, 29 May 2024 13:06:41 -0700
Subject: [PATCH 08/10] Fix readthdocs script; update publish to pypi workflow

---
 .github/workflows/documentation.yml   | 82 ---------------------------
 .github/workflows/publish-to-pypi.yml | 12 ++--
 .readthedocs.yaml                     | 24 +++++---
 3 files changed, 23 insertions(+), 95 deletions(-)
 delete mode 100644 .github/workflows/documentation.yml

diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml
deleted file mode 100644
index 7ddf5c62..00000000
--- a/.github/workflows/documentation.yml
+++ /dev/null
@@ -1,82 +0,0 @@
-name: Documentation
-
-on:
-  push:
-    branches: [ master, develop, release/** ]
-  pull_request:
-    types: [ opened, synchronize, reopened ]
-  workflow_dispatch:
-    inputs:
-      triggeredBy:
-        description: 'Name of team member who is manually triggering this workflow'
-        required: true
-
-permissions:
-    contents: write
-
-jobs:
-  build-docs:
-    runs-on: ubuntu-latest
-    steps:
-      - run: |
-          echo "This workflow was triggered by: $TRIGGER_PERSON"
-        env:
-          TRIGGER_PERSON: ${{ inputs.triggeredBy }}
-      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
-      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
-      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
-
-      #----------------------------------------------
-      #       check-out repo and set-up python
-      #----------------------------------------------
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Set up python
-        id: setup-python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.11.8'
-      #----------------------------------------------
-      #  -----  install & configure poetry  -----
-      #----------------------------------------------
-      - name: Install Poetry
-        uses: snok/install-poetry@v1
-        with:
-          virtualenvs-create: true
-          virtualenvs-in-project: true
-          installer-parallel: true
-
-      #----------------------------------------------
-      #       load cached venv if cache exists
-      #----------------------------------------------
-      - name: Load cached venv
-        id: cached-poetry-dependencies
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }}
-      #----------------------------------------------
-      # install dependencies if cache does not exist
-      #----------------------------------------------
-      - name: Install dependencies
-        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root
-      #----------------------------------------------
-      # install your root project, if required
-      #----------------------------------------------
-      - name: Install project
-        run: poetry install --all-extras --no-interaction --with docs
-      #----------------------------------------------
-      #              publish documentation
-      #----------------------------------------------
-      - name: Sphinx build
-        run: |
-          poetry run sphinx-build docs/source _build
-      - name: Deploy
-        if: github.head_ref == 'master'
-        uses: peaceiris/actions-gh-pages@v3
-        with:
-          publish_branch: gh-pages
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: _build/
-          force_orphan: true
diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml
index 78a5aff6..c7786783 100644
--- a/.github/workflows/publish-to-pypi.yml
+++ b/.github/workflows/publish-to-pypi.yml
@@ -8,7 +8,7 @@
 # separate terms of service, privacy policy, and support
 # documentation.
 
-name: Upload Python Package
+name: Publish HNX
 
 on:
   release:
@@ -24,14 +24,18 @@ permissions:
   contents: read
 
 jobs:
-  deploy:
+  publish-to-pypi:
     runs-on: ubuntu-latest
-
     steps:
+    - run: |
+        echo "This workflow was triggered by: $TRIGGER_PERSON"
+      env:
+        TRIGGER_PERSON: ${{ inputs.triggeredBy }}
     - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
     - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
     - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
-    - run: echo "Building wheel from tag ${{ github.ref_name }}"
+    - run: echo "Building wheel from branch ${{ github.ref_name }}"
+
     - uses: actions/checkout@v4
 
     - name: Build and publish distribution 📦 to Test PyPI
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 51c9eeb7..8c9819ce 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -1,6 +1,8 @@
 # .readthedocs.yaml
 # Read the Docs configuration file
 # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+# Uses poetry to install dependencies
+# See https://docs.readthedocs.io/en/latest/build-customization.html#install-dependencies-with-poetry
 
 # Required
 version: 2
@@ -9,12 +11,24 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.11"
+    python: "3.10"
     # You can also specify other tool versions:
     # nodejs: "19"
     # rust: "1.64"
     # golang: "1.19"
 
+  jobs:
+    post_create_environment:
+      # Install poetry
+      # https://python-poetry.org/docs/#installing-manually
+      - pip install poetry
+    post_install:
+      # Install dependencies with 'docs' dependency group
+      # https://python-poetry.org/docs/managing-dependencies/#dependency-groups
+      # VIRTUAL_ENV needs to be set manually for now.
+      # See https://github.com/readthedocs/readthedocs.org/pull/11152/
+      - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install --with docs
+
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
    configuration: docs/source/conf.py
@@ -24,11 +38,3 @@ formats:
    - pdf
    - htmlzip
    - epub
-
-# Optionally declare the Python requirements required to build your docs
-python:
-   install:
-   - method: pip
-     path: .
-     extra_requirements:
-       - documentation

From b8cfe3e5f78525cbad0531809dc682a6971f77ab Mon Sep 17 00:00:00 2001
From: Mark Bonicillo 
Date: Wed, 29 May 2024 13:29:08 -0700
Subject: [PATCH 09/10] Fix typos in documentation

---
 LONG_DESCRIPTION.rst           | 10 ++++------
 docs/source/overview/index.rst |  2 +-
 2 files changed, 5 insertions(+), 7 deletions(-)

diff --git a/LONG_DESCRIPTION.rst b/LONG_DESCRIPTION.rst
index 4609d9be..ee816721 100644
--- a/LONG_DESCRIPTION.rst
+++ b/LONG_DESCRIPTION.rst
@@ -37,14 +37,12 @@ can be imported using their incidence dictionaries and/or property datafames.**
 What's New
 ~~~~~~~~~~~~~~~~~~~~~~~~~
 #. We've added new functionality to Hypergraphs; you can add and remove nodes, edges, and incidences on Hypergraph.
-#. Arithmetic operations have also been added to Hypergraph: sum, difference, union, intersection
-#. We've also added a new tutorial on basic hypergraph arithmetic operations
-#. Under the hood, the EntitySet has been replaced by HypergraphView, new factory methods have been created to support
-the Hypergraph constructor, and internal classes such as IncidenceStore and PropertyStore help maintain the structure
-and attributes of a Hypergraph
+#. Arithmetic operations have also been added to Hypergraph: sum, difference, union, intersection.
+#. We've also added a new tutorial on basic hypergraph arithmetic operations.
+#. Under the hood, the EntitySet has been replaced by HypergraphView, new factory methods have been created to support the Hypergraph constructor, and internal classes such as IncidenceStore and PropertyStore help maintain the structure and attributes of a Hypergraph.
 
 What's Changed
 ~~~~~~~~~~~~~~~~~~~~~~~~~
 #. Documentation has received a major update; the Glossary and docstrings of Hypergraph have been updated.
-#. HNX now requires Python ^3.10,<=3.12
+#. HNX now requires Python >=3.10,<4.0.0
 #. We've upgraded all the underlying core libraries to the latest versions.
diff --git a/docs/source/overview/index.rst b/docs/source/overview/index.rst
index 22d1543e..e49811f5 100644
--- a/docs/source/overview/index.rst
+++ b/docs/source/overview/index.rst
@@ -54,7 +54,7 @@ available on `GitHub `_
         Open In Colab
           Basic 6 - Hypergraph Arithmetic.ipynb
       
-   

+   


    Additional Tutorials may be found in the Tutorials Folder.
From 21b0f6bf044df4138b42fc995653a47e77847f6a Mon Sep 17 00:00:00 2001 From: Mark Bonicillo Date: Wed, 29 May 2024 13:44:51 -0700 Subject: [PATCH 10/10] =?UTF-8?q?bump:=20version=202.3.1=20=E2=86=92=202.3?= =?UTF-8?q?.2?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .cz.toml | 2 +- docs/source/conf.py | 2 +- hypernetx/__init__.py | 2 +- pyproject.toml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.cz.toml b/.cz.toml index 0a0a565c..d8d50859 100644 --- a/.cz.toml +++ b/.cz.toml @@ -1,6 +1,6 @@ [tool.commitizen] name = "cz_conventional_commits" -version = "2.3.1" +version = "2.3.2" version_files = [ "pyproject.toml", "docs/source/conf.py", diff --git a/docs/source/conf.py b/docs/source/conf.py index ad0e264d..0abb590e 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,7 +19,7 @@ import os -__version__ = "2.3.1" +__version__ = "2.3.2" # If extensions (or modules to document with autodoc) are in another directory, diff --git a/hypernetx/__init__.py b/hypernetx/__init__.py index 25340bdd..1a686e22 100644 --- a/hypernetx/__init__.py +++ b/hypernetx/__init__.py @@ -11,4 +11,4 @@ from hypernetx.utils import * from hypernetx.utils.toys import * -__version__ = "2.3.1" +__version__ = "2.3.2" diff --git a/pyproject.toml b/pyproject.toml index b573a716..dbd3bf3a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "hypernetx" -version = "2.3.1" +version = "2.3.2" description = "HyperNetX is a Python library for the creation and study of hypergraphs." authors = ["Brenda Praggastis ", "Dustin Arendt ", "Sinan Aksoy ", "Emilie Purvine ",