diff --git a/pkg/executor/cte.go b/pkg/executor/cte.go
index 9928bc652b639..317f2aba79163 100644
--- a/pkg/executor/cte.go
+++ b/pkg/executor/cte.go
@@ -545,6 +545,16 @@ func (p *cteProducer) computeChunkHash(chk *chunk.Chunk) (sel []int, err error)
 			hashBitMap[val] = true
 		}
 	} else {
+		// Length of p.sel is init as MaxChunkSize, but the row num of chunk may still exceeds MaxChunkSize.
+		// So needs to handle here to make sure len(p.sel) == chk.NumRows().
+		if len(p.sel) < numRows {
+			tmpSel := make([]int, numRows-len(p.sel))
+			for i := 0; i < len(tmpSel); i++ {
+				tmpSel[i] = i + len(p.sel)
+			}
+			p.sel = append(p.sel, tmpSel...)
+		}
+
 		// All rows is selected, sel will be [0....numRows).
 		// e.sel is setup when building executor.
 		sel = p.sel
diff --git a/pkg/executor/cte_test.go b/pkg/executor/cte_test.go
index 4133e4401ed97..0f9c5c2d07a4b 100644
--- a/pkg/executor/cte_test.go
+++ b/pkg/executor/cte_test.go
@@ -505,3 +505,19 @@ func TestCTEShareCorColumn(t *testing.T) {
 	tk.MustExec("insert into t1 values(1), (2);")
 	tk.MustQuery("SELECT * FROM t1 dt WHERE EXISTS( WITH RECURSIVE qn AS (SELECT a AS b UNION ALL SELECT b+1 FROM qn WHERE b=0 or b = 1) SELECT * FROM qn dtqn1 where exists (select /*+ NO_DECORRELATE() */ b from qn where dtqn1.b+1));").Check(testkit.Rows("1", "2"))
 }
+
+func TestCTESmallChunkSize(t *testing.T) {
+	store := testkit.CreateMockStore(t)
+	tk := testkit.NewTestKit(t, store)
+	tk.MustExec("use test;")
+	tk.MustExec("drop table if exists t1")
+	tk.MustExec("create table t1(c1 int);")
+	insertStr := "insert into t1 values (0)"
+	for i := 1; i < 300; i++ {
+		insertStr += fmt.Sprintf(", (%d)", i)
+	}
+	tk.MustExec(insertStr)
+	tk.MustExec("set @@tidb_max_chunk_size = 32;")
+	tk.MustQuery("with recursive cte1(c1) as (select c1 from t1 union select c1 + 1 c1 from cte1 limit 1 offset 100) select * from cte1;").Check(testkit.Rows("100"))
+	tk.MustExec("set @@tidb_max_chunk_size = default;")
+}