From ebd53452c48affc5dfcf1a42981a491737ff660b Mon Sep 17 00:00:00 2001
From: jykr <jayoung_ryu@g.harvard.edu>
Date: Mon, 1 Apr 2024 08:54:06 -0500
Subject: [PATCH] fix documentations for the proliferation screen tutorial

---
 docs/_ldl_cds.md     | 2 +-
 docs/index.rst       | 3 ++-
 docs/prolif_gwas.rst | 2 +-
 3 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/docs/_ldl_cds.md b/docs/_ldl_cds.md
index 8b0379f..90740ed 100755
--- a/docs/_ldl_cds.md
+++ b/docs/_ldl_cds.md
@@ -8,7 +8,7 @@ Tiling screen that tiles gRNA densely across locus or multiple loci, selected ba
   </tr>
   <tr>
     <th>Selection</th>
-    <td>Cells are sorted based on FACS signal quantiles  <br>  <img src="/crispr-bean//crispr-bean/assets/sorting_bins@8x.png" alt="variant library design" width="300"/></td>
+    <td>Cells are sorted based on FACS signal quantiles  <br>  <img src="/crispr-bean/assets/sorting_bins@8x.png" alt="variant library design" width="300"/></td>
   </tr>
 </table>
 
diff --git a/docs/index.rst b/docs/index.rst
index 8e312d9..34d4e8a 100755
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -20,7 +20,6 @@ Workflows
     gwas
     cds
     prolif_gwas
-    input
 
 ===================
 API references
@@ -28,12 +27,14 @@ API references
 .. toctree::
     :maxdepth: 3
 
+    input
     subcommands
 
 ===================
 Screen data structure
 ===================
 .. toctree::
+    
     reporterscreen
     ReporterScreen_api
 
diff --git a/docs/prolif_gwas.rst b/docs/prolif_gwas.rst
index 26bdbe6..0206c15 100644
--- a/docs/prolif_gwas.rst
+++ b/docs/prolif_gwas.rst
@@ -1,5 +1,5 @@
 Proliferation screen with GWAS library
 **********************************************
-.. mdinclude:: _profile_gwas.md
+.. mdinclude:: _prolif_gwas.md
 
 See :ref:`subcommands` for the full details.