From 6739ec366fb021ef79f0febf79723339c4832c10 Mon Sep 17 00:00:00 2001 From: Jayoung Ryu Date: Fri, 21 Jun 2024 16:47:31 -0400 Subject: [PATCH] add missed section title --- docs/model.rst | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/docs/model.rst b/docs/model.rst index 8be7715..993f9d4 100644 --- a/docs/model.rst +++ b/docs/model.rst @@ -187,8 +187,7 @@ resulting coefficients :math:`a = 0.2513` and :math:`b = \ - 1.9458` are used for the analyses presented in this paper. The residual of the regression is fitted as the Normal distribution, which is used as the prior for the logit-scale deviation :math:`l_{\pi}` (see full detail in -`Accessibility -scaling <#adjusting-editing-rates-by-accessibility-with---scale-by-acc>`__ +`Accessibility scaling <#adjusting-editing-rates-by-accessibility-with---scale-by-acc>`__ section). ``bean run`` without reporter @@ -371,8 +370,11 @@ are reported. The model, variational distribution and inference procedure are available as the default options of ``bean-run`` command of *bean*\ :sup:`21` software. Specifically, BEAN-Uniform is run with ``--uniform-edit`` and full BEAN model is run by specifying -``--scale-by-acc`` argument. ## Adjusting editing rates by accessibility -with ``--scale-by-acc`` +``--scale-by-acc`` argument. + + +Adjusting editing rates by accessibility with ``--scale-by-acc`` +---------------------------------------------------------------------------- BEAN takes account for the observation that endogenous editing rate  :math:`\widetilde{\mathbf{\pi}}` is roughly proportional to the