From 56a055942fb1761da932924d3c8f2baa7d503569 Mon Sep 17 00:00:00 2001
From: Jayoung Ryu <jayoung_ryu@g.harvard.edu>
Date: Tue, 21 May 2024 22:12:31 -0400
Subject: [PATCH] enforce older matplotlib

---
 README.md | 2 +-
 setup.py  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 7671030..6f6760d 100755
--- a/README.md
+++ b/README.md
@@ -51,7 +51,7 @@ See the [documentation](https://pinellolab.github.io/crispr-bean/) for tutorials
 | Coding sequence tiling libarary | Survival / Proliferation | Yes/No | [Coding sequence tiling screen](https://pinellolab.github.io/crispr-bean/tutorial_prolif_cds.html)
 | Perturbation library without reporter | FACS sorting | No | [No reporter screen](https://pinellolab.github.io/crispr-bean/tutorial_no_edit.html)
 
-Also see notebook that visualizes screen analysis result [here]().
+Also see notebook that visualizes screen analysis result [here](https://github.com/pinellolab/crispr-bean/blob/main/docs/visualize_var.ipynb).
 
 
 ### Library design: variant or tiling?
diff --git a/setup.py b/setup.py
index db106f7..dfa0442 100755
--- a/setup.py
+++ b/setup.py
@@ -29,7 +29,7 @@
         "pandas",
         "scipy",
         "perturb-tools>=0.3.3",
-        "matplotlib",
+        "matplotlib<=3.9",
         "seaborn>=0.13.0",
         "tqdm",
         "bio",