diff --git a/docs/_tutorial_custom_prior.md b/docs/_tutorial_custom_prior.md index 96b6d93..843a868 100644 --- a/docs/_tutorial_custom_prior.md +++ b/docs/_tutorial_custom_prior.md @@ -16,9 +16,10 @@ bean run sorting variant $working_dir/${screen_id1}.h5ad --control-condition D14 # 2. Build prior # Feed first and second `bean run` scripts, and output file pickle file path that will store prior_params +# Usage: bean build-prior command_run1 command_run2 raw_output_run1 param_output bean build-prior \ -'bean run sorting variant $working_dir/${screen_id1}.h5ad --control-condition D14_1 -o $working_dir --fit-negctrl --save-raw' \ -'bean run sorting variant $working_dir/${screen_id2}.h5ad --control-condition D14_2 -o $working_dir --fit-negctrl' \ +"bean run sorting variant $working_dir/${screen_id1}.h5ad --control-condition D14_1 -o $working_dir --fit-negctrl --save-raw" \ +"bean run sorting variant $working_dir/${screen_id2}.h5ad --control-condition D14_2 -o $working_dir --fit-negctrl" \ $working_dir/bean_run_result.${screen_id1}/MixtureNormal.result.pkl \ $working_dir/prior_params.pkl