With Montgomery

[kclem]

What's Changed

This release improves parallel processing performance and increases flexibility in input file headers and output file naming conventions.

Major updates

• Parallelization updates
  • Don't start pool when only using single thread by @Colelyman in Fix multiprocessing error, don't start pool when only using single thread #302
  • Parallel plotting fix by @Colelyman and @kclem in 546446e and Parallel plotting fix #286
  • Raise exceptions from within futures in plot_pool in a439f09
  • Enable CRISPRessoPooled multiprocessing when os allows multi-thread file append inhttps://github.com/pinellolab/CRISPResso2/commit/ebb016dff46c280dce8c3c09e8ac0e0cc25d4d74
• Allow multiple overlapping sgRNA matches in reference (previous behavior was to only search for non-overlapping sgRNA sites in the reference sequence in 32e1e97
• Assert correct input fastq file format in 7248ba8

Minor updates:

• Sort pandas dataframes by # of reads and sequences so that the order is consistent for testing by @Snicker7 and @Colelyman in Sort pandas dataframes by # of reads and sequences so that the order is consistent #316
• Update base_editor parameters in README and add Plot Harness by @Colelyman in Update base_editor parameters in README and add Plot Harness #301
• Add verbosity argument to CRISPRessoAggregate (Insertions longer than the remaining reference sequence are missed #18) fixes Issue with args in CRISPRessoAggregate #306 by @Colelyman in Add verbosity argument to CRISPRessoAggregate (#18) fixes #306 #307
• Clarify CRISPRessoWGS intended use by @Colelyman in Clarify CRISPRessoWGS intended use #303
• Update plotCustomAllelePlot.py script for custom plot script #292 by @kclem in Update plotCustomAllelePlot.py script for #292 #293
• Case-insensitive headers accepted in CRISPRessoPooled e577318
• Fix multiprocessing lambda pickling by @Colelyman in Fix multiprocessing lambda pickling #311
• Allow dashes in filenames in 712eb2a

Full Changelog: v2.2.12...v2.2.13

---

This discussion was created from the release With Montgomery.