-
Notifications
You must be signed in to change notification settings - Fork 0
/
1bnd111A67B.html
1 lines (1 loc) · 6.06 KB
/
1bnd111A67B.html
1
<!DOCTYPE html><html><head><meta name='viewport' content='width=device-width, initial-scale=1'><link rel='icon' type='image/png' href='icon.png'><link rel = 'stylesheet' href = 'style.css'><script src='3Dmol-min.js'></script><title>ReDisulphID</title></head><body><a href = 'list.html'><div class= 'title'>ReDisulphID<div class='subtitle'><p>a tool for identifying redox-active intermolecular disulphides from structures</div></div></a><div class = 'main'><div class = 'menu'><a href = 'index.html'><div class= 'menuitem button'>Home</div></a><a href = 'about.html'><div class= 'menuitem button'>About</div></a><a href = 'list.html'><div class= 'menuitem button'>List</div></a></div><div class = 'item structure' style='background:rgba(200, 200, 200, 0.4);;'><p class = 'struc' hidden>1bnd A 111 B 67</p><div style='height: 100%; position: relative;' class='viewer_3Dmoljs' id='viewer' data-pdb='1bnd' data-backgroundcolor='0xffffff' data-surface='opacity:0.7;color:white' data-style='stick' data-ui='false' data-select1='chain:A;resi:111' data-select2='chain:B;resi:67' data-zoomto='chain:A;resi:111' data-labelres1 = '' data-labelres2 = '' data-surface1='opacity:.9;color:red' data-surface2 = 'opacity:.7;color:red'></div></div><div class = 'item redoxstatement' style='background:rgba(255,250.87920000000003,100,0.4);'>A redox-regulated disulphide may form between <b>Brain-derived neurotrophic factor </b> and <b>Neurotrophin-3</b> at these cysteines. However, the redox score of this cysteine pair is lower than any known redox-active disulphide. </div><div class = 'grid'><div class = 'item infotitle' style='background:;'>Redox score</div><div class = 'item info' style='background:;'>44.72</div><div class = 'item infotitle' style='background:;'>PDB code</div><a class = 'link' href = 'https://www.rcsb.org/structure/1bnd'><div class = 'item info' style='background:;'>1bnd</div></a><div class = 'item infotitle' style='background:;'>Structure name</div><div class = 'item info' style='background:;'>structure of the brain-derived neurotrophic factor(slash)neurotrophin 3 heterodimer</div><div class = 'item infotitle' style='background:;'>Structure deposition date </div><div class = 'item info' style='background:;'>1994-12-12</div><div class = 'item infotitle' style='background:;'>Thiol separation (Å)</div><div class = 'item info' style='background:;'>9.08</div><div class = 'item infotitle' style='background:;'>Half-sphere exposure sum</div><div class = 'item info' style='background:;'>85</div><div class = 'item infotitle' style='background:;'>Minimum pK<sub>a</sub></div><div class = 'item info' style='background:;'>nan</div><div class = 'item infotitle' style='background:;'>% buried</div><div class = 'item info' style='background:;'>nan</div><div class = 'item infotitle' style='background:rgba(0,255,100,0.4);'>Protein A name</div><div class = 'item info' style='background:rgba(0,255,100,0.4);'>Brain-derived neurotrophic factor</div><div class = 'item infotitle' style='background:rgba(0,100,255,0.4);'>Protein B name</div><div class = 'item info' style='background:rgba(0,100,255,0.4);'>Neurotrophin-3</div><div class = 'item infotitle' style='background:rgba(0,255,100,0.4);'>Protein A accession</div><a class = 'link' href = 'https://www.uniprot.org/uniprotkb/P23560/entry'><div class = 'item info' style='background:rgba(0,255,100,0.4);'>P23560</div></a><div class = 'item infotitle' style='background:rgba(0,100,255,0.4);'>Protein B accession</div><a class = 'link' href = 'https://www.uniprot.org/uniprotkb/P20783/entry'><div class = 'item info' style='background:rgba(0,100,255,0.4);'>P20783</div></a><div class = 'item infotitle' style='background:rgba(0,255,100,0.4);'>Protein A residue number</div><div class = 'item info' style='background:rgba(0,255,100,0.4);'>239 (Residue 111 in this structure)</div><div class = 'item infotitle' style='background:rgba(0,100,255,0.4);'>Protein B residue number</div><div class = 'item info' style='background:rgba(0,100,255,0.4);'>205 (Residue 67 in this structure)</div></div><div class = 'citation'>Other intermolecular cysteine pairs in these peptides:</div><div class = 'alternates'><a href = '3buk110A110B.html'><div class = 'item info alternate button' style='background:rgba(233.54642536588938,255,100,0.4);'>Cysteine <b>248</b> of <b>Neurotrophin-3</b> and cysteine <b>248</b> of <b>Neurotrophin-3</b> with a redox score of 49.63</div></a><a href = '1bnd111A110B.html'><div class = 'item info alternate button' style='background:rgba(237.27551874941844,255,100,0.4);'>Cysteine <b>239</b> of <b>Brain-derived neurotrophic factor</b> and cysteine <b>248</b> of <b>Neurotrophin-3</b> with a redox score of 48.85</div></a><a href = '1bnd111A14B.html'><div class = 'item info alternate button' style='background:rgba(246.51018908781563,255,100,0.4);'>Cysteine <b>239</b> of <b>Brain-derived neurotrophic factor</b> and cysteine <b>152</b> of <b>Neurotrophin-3</b> with a redox score of 47.02</div></a><a href = '3buk14A110B.html'><div class = 'item info alternate button' style='background:rgba(248.89218576141488,255,100,0.4);'>Cysteine <b>152</b> of <b>Neurotrophin-3</b> and cysteine <b>248</b> of <b>Neurotrophin-3</b> with a redox score of 46.57</div></a><a href = '1bnd13A110B.html'><div class = 'item info alternate button' style='background:rgba(254.01948478871552,255,100,0.4);'>Cysteine <b>141</b> of <b>Brain-derived neurotrophic factor</b> and cysteine <b>248</b> of <b>Neurotrophin-3</b> with a redox score of 45.63</div></a><a href = '3buk110A67B.html'><div class = 'item info alternate button' style='background:rgba(254.5214995807881,255,100,0.4);'>Cysteine <b>248</b> of <b>Neurotrophin-3</b> and cysteine <b>205</b> of <b>Neurotrophin-3</b> with a redox score of 45.54</div></a><a href = '1bnd68A110B.html'><div class = 'item info alternate button' style='background:rgba(255,254.07690000000002,100,0.4);'>Cysteine <b>196</b> of <b>Brain-derived neurotrophic factor</b> and cysteine <b>248</b> of <b>Neurotrophin-3</b> with a redox score of 45.29</div></a></div><div class = 'citation'>If this tool was useful for finding a disulphide, please cite:<p></div></div><script src='search.js'></script></body></html>