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For now, I would communicate this as a "known-issue" to Joey/Heather, and defer fixes until Matt is back since not sure what direction we want to go here - remove ability to delete the column or uncheck the box. Deleting the column is problematic for the goal of the research/wrapper.
Test device
MacBook Air M1 chip
Operating System
15.0.1
Browser
Safari 18.0.1
Problem description
For phetsims/qa#1170 and similar to this issue, deleting a column doesn't uncheck the variable in the side panel.
Steps to reproduce
Visuals
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