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Fixed over in #105. Thanks for the report. The bug was actually over in axon, where observableArray needed to lock in its lengthProperty listeners when it was marked as having order dependencies phetsims/axon@4f571cb
This was found during the "Does the sim behave correctly when listener order is shuffled?" step of the code review, see #165.
When testing with randomized listener order, the buttons for adding protons, neutrons, and both can be left in a disabled state after a reset.
To duplicate:
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