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CELLECT-GENES runs the entire MAGMA subworkflow from scratch every time #60

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pascaltimshel opened this issue Sep 1, 2020 · 0 comments
Open

CELLECT-GENES runs the entire MAGMA subworkflow from scratch every time #60

pascaltimshel opened this issue Sep 1, 2020 · 0 comments
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@JonThom
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enhancement New feature or request priority_high High priority

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@pascaltimshel
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Issue: currently CELLECT-GENES runs the entire MAGMA subworkflow from scratch every time.

Proposed debugging:

  • Does the same problem occur when only the MAGMA workflow is run?
  • The temp() function could play a role in the problem . Try running with --notemp arg.
    ---reason is good for debugging.
  • snakemake --rulegraph | dot -Tpng > rulegraph.png` good for debugging
@pascaltimshel pascaltimshel added enhancement New feature or request priority_high High priority labels Sep 1, 2020
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@pascaltimshel @JonThom