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v0.9.0 Release #179

Merged
merged 66 commits into from
Apr 19, 2024
Merged

v0.9.0 Release #179

merged 66 commits into from
Apr 19, 2024

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donaldcampbelljr
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@donaldcampbelljr donaldcampbelljr commented Apr 18, 2024 •
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[0.9.0] - 2024-04-xx

Fixed

  • Bug with rm_record for filebackend

Added

  • Added results history and history retrieval for both file and db backends via retrieve_history #177.
  • Added remove_record to Pipestat manager object (it is no longer only on backend classes)
  • Added meta key to each record for the file backend
  • db backend will now create an additional sql history table
  • Reporting history is toggleable

Changed

  • Removing the last result no longer removes the entire record.
  • pipestat_created_time, and pipestat_modified_timenow live under themeta` key.
  • history lives under the meta key for the filebackend.

closes #177, #176, #174, #173, #172, #171, #169, #161, #160, #144, #175

nsheff and others added 30 commits February 21, 2024 20:27
@nsheff
Allow remote schemas. Fix #160
1e9fbe7
@nsheff
simplify schema repr
f7258d8
@donaldcampbelljr
change initialize pipestatbackend to debug instead of warn, #172
1e084bc
@donaldcampbelljr
remove unused reports.py code. check for appendix when getting file f…
0dfe9e3 
…or table
@donaldcampbelljr
prep for 0.8.3.a1 release
a46ed1e
@donaldcampbelljr
fix rm_record bug using new write_lock
fac8a6b
@donaldcampbelljr
fix rm_record bug using new write_lock
bf0a393
@donaldcampbelljr
update reqs and use lint
db15e0f
@donaldcampbelljr
replace mk_abs_via_cfg with mkabs, add make_subdirectories
91ff657
@donaldcampbelljr
replace read_yaml_data with yacman's load_yaml
a091ecb
@donaldcampbelljr
revert warning per #157
3e00e41
@donaldcampbelljr
Merge pull request #162 from pepkit/remote-schemas
33c8d92 
Allow remote schemas. Fix #160
@donaldcampbelljr
attempt adding smokeshow for coverage reporting #167
30c7404
@donaldcampbelljr
add db-backend dependencies #167
ab993e6
@donaldcampbelljr
remove coverage threshold (temporarily) to make the report informatio…
bf8ab88 
…nal only
@donaldcampbelljr
remove oyaml in favor of pyyaml #144
8fe7087
@donaldcampbelljr
remove unused read_yaml_data per PR #162 and issues #160
3f488fd
@donaldcampbelljr
rename variables and add clarity to docstrings for replace_JSON_refs #…
492391a 
…169
@donaldcampbelljr
add clarity to schema validation exception #173
5edd7fc
@donaldcampbelljr
fix #171
1fe44eb
@donaldcampbelljr
Set force_overwrite to default to True #161
86a6483
@donaldcampbelljr
version bump for v0.9.0a1 prelease
30bcccd
@donaldcampbelljr
initial POC for writing history to results.yaml #177
4b332ce
@donaldcampbelljr
add retrieve_history function #177
c3ffaa7
@donaldcampbelljr
add modification upon result deletion
dfcf9b5
@donaldcampbelljr
add creation of a link table, history table #177
d472562
@donaldcampbelljr
add one to many for history table, comment out link tables
64b76be
@donaldcampbelljr
add record to history with creation of new record
1c13ae4
@donaldcampbelljr
add history modification when new results are reported, some tests br…
44445fb 
…oken due to remove func
@donaldcampbelljr
fix removal on db_backend with foreign_key_constraint
fcfcced
donaldcampbelljr and others added 23 commits April 9, 2024 11:17
@donaldcampbelljr
update changelog, uncomment tests skipping
a2f0710
@khoroshevskyi
updated coverage test
c15df79 
Signed-off-by: Khoroshevskyi <[email protected]>
@donaldcampbelljr
change structure for filebackend history and meta keys
aed739d
@donaldcampbelljr
Merge remote-tracking branch 'origin/dev_record_history' into dev_rec…
a706c3b 
…ord_history
@donaldcampbelljr
No longer remove record if last result is removed (filebackend)
080835c
@donaldcampbelljr
fix list_recent_results with new history data structure for filebackend
787f613
@donaldcampbelljr
add remove_record to main pipestat manager, remove unnecessary tests
63c60be
@donaldcampbelljr
add meta_data_bool for filebackend and fix retrieve_history for new d…
69268b4 
…atastructure
@donaldcampbelljr
fix tests, add trieving history with multi results
4838840
@donaldcampbelljr
add boolean flag to toggle reporting history
144790f
@donaldcampbelljr
if result is exisiting, then place previous result into history
aa7eae6
@donaldcampbelljr
do not add current result to history (db backend)
65ce329
@donaldcampbelljr
update changelog.md
c45ef2f
@donaldcampbelljr
add a hisotory retrieval test for complex objects, add more assertion…
94776ab 
…s to tests
@donaldcampbelljr
add history retrieval to CLI and add test coverage
9f368d9
@donaldcampbelljr
doc strings and adding record not found error
09a18b8
@donaldcampbelljr
Use insert instead of + for appending new columns
7a2b007
@donaldcampbelljr
use a single line to delete linked records
d6a85ff
@donaldcampbelljr
update doc strings
c1694ea
@donaldcampbelljr
Revert "use a single line to delete linked records"
04419a4 
This reverts commit d6a85ff.
@donaldcampbelljr
revert test check/skip conditions
3733c69
@donaldcampbelljr
minor revision to result structure for db backend history
2cf054c
@donaldcampbelljr
Merge pull request #178 from pepkit/dev_record_history
cfc8d01 
Create History for Filebackend and DB Backend
@donaldcampbelljr donaldcampbelljr added this to the v0.9.0 milestone Apr 18, 2024
@donaldcampbelljr donaldcampbelljr merged commit e7d4237 into master Apr 19, 2024
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pipestat should offer the option to include a history of results
3 participants
@donaldcampbelljr @nsheff @khoroshevskyi