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build-it-win
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# -*-shell-script-*-s
# Prerequisites: sed, GNU make, libtool, wget
#
# (and for autogening: GNU m4, GNU autoconf, GNU automake)
#
# libz is optional for the moment
# 1.3 Put RELEASE-NOTES on web site too
# 1.4 Apply both of Ezra's patches of today Wed Mar 2 22:51:36 GMT 2005
# Update clipper version (the one with shelx .fcf ability)
# 1.5 Apply Ezra's gtkglarea patch and GSL patch.
# Update version of FFTW and other updates from MATSUURA Takanori.
# 1.6 Update to mmdb-1.0.8 [# for molrep output]
# 1.7 Fix logic of fftw test
# 1.8 Add the clipper edcalc patch (suggested by Ezra ages ago)
# 1.9 Add Fedora Core 4 support and testing for the need to build mccp4,
# mmdb and clipper.
# 1.10 Tidy up nightly code.
# 1.11 Add code testing the need for guile_gui and goosh.
# 1.12 Tidy nightly code again.
# 1.13 Don't escape the "."s in gsub for new gawk (Ward Smith).
# 1.14 20050628 Test for imlib on the installation, not the system (ignore
# the system).
# 1.15 20050709 Add glib gstrfuncs patch
# 1.16 20050709 Update to guile 1.6.7 and add lt_preloaded_symbols patch
# 1.17 20050721 Added clipper status code to compiling clipper part.
# Redirect stderr output?
# fix build_mccp4 problem.
# 1.18 20050722 Fix guile build (wrong http tar file).
# Added freeglut
# 1.19 20050803 Update version of guile-gtk to 0.41
# 1.20 20050815 Several updates and clean up from MATSUURA Takanori.
# 1.21 20050815 Stop if wget test fails.
# 1.22 20050916 Update build for freeglut to use --disable-warnings and
# CFLAGS
# 1.23 20050916 Move "set" so we don't see confusing default coot_version
# 1.24 20051012 Do pre-release tars for a few days.
# 1.25 20051017 Don't make install if Coot's makes fails. Don't make -k
# 1.26 20051018 Handle clipper nxmap patch.
# 1.27 20051027 [Gif, Paris] Fix tarred directory for nightly pre-release
# tars.
# 1.28 20051101 Fix the md5sum for nxmap.h
# 1.29 20051104 Apply most of MATSUURA Takanori's fixes.
# Use CCP4 libs (mtz, clipper, mmdb).
# 1.30 20051109 Darwin setting of FC for CCP4 libs configure.
# 1.31 20051114 Fix coot tar file problem on building pre-release (or not).
# 1.32 20060205 Add scripting variable debugging (its currently not making
# python tar files)
# 1.33 20060214 Get wget testing tar file from YSBL, not chem.gla
# 1.34 20060219 Correct the install position of libccp4c.la
# 1.35 20060219 create time stamp with current time, not the time of
# the previous ccp4 libs file, now the find ctime test works
# as I wanted.
# 1.36 20060220 Add a libmmdb.la too.
# 1.37 20060222 Add Bob Nolte's proxy settings
# 1.38 20060224 dylib variable for libmmdb.la and libccp4c.la
# 1.39 20060225 Fix sedding of libmmdb.la and libccp4c.la
# 1.40 20060323 copy over coot.py to share/coot/python (if we built with
# python)
# 1.41 20060401 Big changes for ccp4 5.0.2 ccp4c libs.
# 1.42 20060404 Various small build debuggings.
# 1.43 20060405 Fix do_nightlies syntax error and fix up glut_prefix build
# problem.
# 1.44 20060405 Fix the tarred directory name when this is not a pre-release
# 1.45 20060406 Check for missing reference structures and monomer lib and
# install them if needed.
# 1.46 20060418 use install_top_dir variable to copy over coot.py (not
# $coot_prefix!)
# 1.47 20060419 Remove the mmdb binaries
# 1.48 20060420 J. Maclean says no guile. He is right. So check install for
# guile, not system.
# 1.49 20060420 Replace many $AUTOBUILD_INSTALLED with $install_top_dir.
# 1.50 20060421 Replace other $AUTOBUILD_INSTALLED with $install_top_dir for
# tar file creation.
# 1.51 20060425 net-http was installing into the wrong place because it had
# been set to install_top_dir, but this was not set as a shell
# (or configured) variable so it was just blank [James Murray].
# Now we export install_top_dir.
# 1.52 20060427 Don't add unecessary tagging of -pre-release to tar_dir at
# the end.
# 1.53 20060503 Force GSL to be in $install_top_dir rather than anywhere.
# 1.54 20060519 Update to extract the right coot version from the release and
# pre-release directories.
# 1.55 20060621 Shuffle around the test for using pre-release
# 1.56 20060626 Fixes from MATSUURA Takanori. Shuffle around the usage of
# install_top_dir.
# 1.57 20060704 run imlib-config from the installation, not anywhere.
# 1.58 20060705 Fix wrong directory to build libtiff.
# 1.59 20060706 guile-config should run with an argument, otherise it
# returns with exit status 1 (and we test for non-zero).
# 1.60 20060706 Fix (directory for) mmdb include file test.
# 1.61 20060707 Add to coot configure line the option for guile_gtk
# 1.62 20060708 Fix coot_prerelease_exists typo in setting install_top_dir
# (oops).
# 1.63 20060708 Add jpeg dependency for imlib
# 1.64 20060708 Add libungif test to installation, not system (imlib
# dependency).
# 1.65 20060710 Add removal of coot_wrap_guile.cc compilation when python
# scripting.
# 1.66 20060710 Python on a Sunday.
# 1.67 20060711 Try to fix up the Makefile for PNG.
# 1.68 20060723 Add in the updates to ltmain.sh, ltconfig and config.guess/sub
# for Mactel build. Add build for readline.
# Readline version typo fixed.
# 1.69 20060724 ENABLE_PYTHON_COOT variable is tested. Don't display
# a variables if we are using a proxy.
# 1.70 20060728 pass CFLAGS and LDFLAGS to guile's configure
# 1.71 20060730 Add test for 64-bit Linux to update config.xxxs and libtool.
# Installation readline built now, not system.
# 1.72 20060801 Use mmdb-1.0.8-ysbl-2, which installs includes in the include
# dir. This matches clipper cif_data_io.cpp which presumes that
# it is there. (And is a clean thing to do anyway).
# 1.73 20060801 Use the new version of libccp4c, with some of Ralf's patches
# and includes that go into include/ccp4 dir.
# 1.74 20060801 Use CCP4_CXXFLAGS argument to clipper (it does the wrong thing
# with --with-ccp4)
# 1.75 20060801 Use -pre-2 version of SSMlib, that has -Ixxx/include/mmdb to
# find mmdb include files.
# 1.76 20060808 test for libjpeg.$shared_lib_ext not libjpeg.so. LTE bug.
# 1.77 20060818 Force update of libtool and config files for libjpeg. Extend
# the make install proceedure. Lynn Ten Eyck reported problems
# here.
# 1.78 20060823 Add poll fix and getpwuid fix to glib build on Intel Mac.
# 1.79 20060827 Add fix for gtk-canvas from fink for Intel Mac.
# 1.80 20061002 Change freeglut test to test instaltion, not system.
# 1.81 20061012 The path used to find *-config files should be the same one
# that new executables are added (it was $AUTOBUILD_INSTALLED)
# and it should be $AUTOBUILD_INSTALLED-pre-release/bin) when
# we are building a pre-release.
# 1.82 20061012 Change the destination tar file so that there are nightly
# and stable directories for the binary tar files on the web
# server.
# 1.83 20061107 cd to the clipper dir when building clipper. Pirate and
# bucca are not (attempted to be) built then.
# 1.84 20061107 Capture and report error status from make in GSL (intel mac
# build fails).
# 1.85 20061107 Use GSL version 1.8, which includes Charles Ballard's fix for
# fp_regs.h
# 1.86 20061108 Add fink-based args for configure of gtk for Darwin
# 1.87 20061108 Fix ltmain.sh updating for Gtk (oops!).
# 1.88 20061122 Fix coot tar directory now that we have revision numbers in
# tar file name.
# 1.89 20061123 Fix/add test for ssmlib build (now depends on mmdb build) and
# libccp4c build (now depends on xxx/include/ccp4/cmtzlib.h).
# 1.90 20061128 Allow the user to specify if the dependencies should be checked
# on the system or only in the autobuild installed directory.
# Needs more checks to use this. Currently only glib and gtk
# tests.
# 1.91 20061211 Don't make install for guile-gtk if the make fails - or the
# dependency check for guile-gtk in coot's configure passes
# when it should fail (maybe).
# 1.92 20061212 Apply Charles Ballards libtool patch for Macs for imlib and
# guile-gtk.
# 1.93 20061212 Fiddle the env vars to compile gtk+ on Mac.
# 1.94 20070104 Non-pre-release build problems, BINARY_DEST_DIR
# 2.01 20070109 imlib tar gz should be downloaded from the correct directory
# (sigh).
# 2.02 20070117 Try to compile clipper with -fno-strict-aliasing
# 2.03 20070123 Tell us where the gtkglarea include file was found.
# 2.04 20070124 GCC 3.2 on RH8 machine cannot compile new clipper, so add a
# patch if needed.
# 2.05 20070216 Put libtiff after libjpeg and give tiff's configure command
# line args to find jpeg.
# 2.06 20070306 Put in the clipper<->ccp4 new dist patch.
# 2.07 20070319 Remove == comparisons - Lothar Esser.
# 2.08 20070424 --with-jpeg-lib-dir should be a lib dir!
# 2.09 20070501 Fix the setting of coot_version when no pre-release set.
# 2.10 20071002 Post install slim the binaries. Add helper functions.
# 2.11 20071005 Add some debugging to make_tar. It doesn't seem to work
# currently.
# 2.12 20071005 Fix post_install_slim call.
# 2.13 20071005 Fix slim_dir
# 2.14 20071006 Adjust python scripting settings, so that it should try
# to compile with python most of the time now.
# 2.15 20071008 Fix extra fi, uncommented typo.
# 2.16 20071010 ENABLE_PYTHON_COOT=no for now.
# 2.17 20071105 Swap out DL Clipper for York clipper [whoosh, bang, kerpow!]
# enable-cns
# 2.18 20071105 Backpeddle to mmdb 1.08. Baah.
# 2.19 20071108 Version 1.08-ysbl-3 of mmdb.
# 2.20 20071118 No longer make the full fat tar file.
# 2.21 20071120 Sourcefource no longer distributes libungif, now in
# ysbl software/extras
# 2.22 20071121 set the architecture for ubuntu systems.
# 2.23 20071125 Fix typo in recent fixes.
# 2.24 20071126 Fix setting of systype for MacOSX, hopefully.
# 2.25 20071126 Another try to fix setting of systype for MacOSX.
# 2.26 20071130 Try to enable python
# 2.27 20071207 More python tinkering. Upgrade to 2.5.1
# 2.28 20071207 Add greg. If in York, use it to test before installing.
# 2.29 20071208 Setup CCP4 and use it to test coot before making binaries.
# 2.30 20071209 Add dewinter's ccp4 setup in setup_ccp4.
# 2.31 20071212 Redirect testing output to $LOGS/$HOST-testing.log
# 2.32 20071213 Copy over the ChangeLog, README and RELEASE-NOTES on good test
# 2.33 20071215 Pythonize only sometimes, default off.
# 2.34 20071215 Tell us some Python info
# 2.35 20071215 Python settings outside the subshell.
# 2.36 20071219 Set up for testing and tars on biop too.
# 3.00 20080108 Gtk+-2 version
# 3.01 20080118 Add GtkGlExt
# 3.02 20080121 Tinker with guile build settings.
# 3.03 20080124 Build GTK2 from scratch: librsvg, cairo, pango, glitz. glib, gtk+-2
# 3.04 20080128 Add a test for the existance of pygtk
# 3.05 20080129 Add pkg-config and pygobject
# 3.06 20080130 Add test for pycairo
# 3.07 20080130 pycairo needs 1.4.12 - so test for cairo, setting build_gtk=1 on
# failure
# 3.08 20080130 Remove static patch (for sgi). Add test/build for freetype2
# 3.09 20080130 fontconfig added too.
# 3.10 20080131 Change HOSTLOGDIR to include gtk2 to separate it from gtk1 build logs.
# 3.11 20080201 Fix problem in scripting args to coot's configure.
# 3.12 20080207 Add test and build of ATK, needed for gtk+2.10.x
# 3.13 20080208 lib cleaning problems, add debugging.
# 3.14 20080208 Try requiring gtk 2.10
#
# BL says:: I should do build versioning tooo!
# let's start with 1.1
#
# 1.1 08/05/11 switch to new style Refmac library
# 1.2 25/06/11 apply clipper thread patch
# 1.3 31/07/11 add proper goocanvas.
# 1.4 25/02/12 Use libccp4c-5.0.2-ysbl-3.tar.gz, that has libccp4c_la_LIBADD.
# 1.5 26/08/12 Update curl to libcurl_version=7.27.0
# 1.6 27/08/12 Remove old stable installed files before making new stable.
# 1.7 22/09/12 update to mmdb 1.24.2
# 1.8 01/10/12 use mkdir_maybe, make sure glut things are copied in dirs,
# use make -r flag for coot (speed up)
# 1.9 24/01/13 Move pre-release and release server-dir to Cambridge.
# 1.10 04/02/13 Refmac dictionary 5.39
# href to get pre release version
# 1.11 28/02/13 New mmdb version - 1.25.0
# 1.12 28/04/13 mmdb version bump 1.25.2
# update to LMB-MRC download locations
# 1.13 14/05/13 Add COOT_BUILD_INFO_STRING
# 1.14 14/05/13 remove install_top_dir before stable install
# 1.15 06/06/13 For Release 0.7.1, change release vs pre-release logic
# (MRC server)
# 1.16 18/06/13 More tinkering to get correct version for release from server.
# 1.17 08/07/13 Adjust to build stable logic.
# 1.18 18/08/13 Use ssm-1.3 and update mmdb tar server spec.
# 1.19 04/09/13 Enable veryclean build, i.e. remove build dir, by flag
# 1.20 xxxxx/14 merged with pre 0.8 script
# 1.21 xxxxx/14 various updated binary downloads (NAME?FIXME)
# 1.22 11/07/14 use msys guile binaries
# 1.23 19/10/14 update to mmdb 2, ssm 1.4, bring in line with build-it
# new place for python install (prefix/pythonxy)
# 1.24 06/01/15 Add WGETO
script_version=1.24
# :: NOTE::
# this "strange" construction of variable names: x=${x:=thing} sets the
# variable x only if it has not previously been defined.
#
# So, the idea is that you write a wrapper for this script (defining typically
# AUTOBUILD_INSTALLED, AUTOBUILD_BUILD, LOGS and build_coot_prerelease) then
# source this file. That means that you (probably) don't have to edit your
# version of build-it every time it changes.
# ENABLE_PYTHON_COOT: if ENABLE_PYTHON_COOT is set to 0 or "no" then
# python coot is not enable (guile coot is enabled). if
# ENABLE_PYTHON_COOT is set, but not set to 0 or no then python coot
# is enabled. If ENABLE_PYTHON_COOT is not set, the guile-coot is
# enabled (python coot is not enabled).
# Pythonizing coot makes non-transferable binararies (why?). Let
# the pythonness be controlled on the command line:
#
ENABLE_PYTHON_COOT=yes
# for Windows we shall have an option to enable Guile and python is default
if [ "$1" = "guile" ] ; then
ENABLE_GUILE_COOT=yes
build_type=-guile
else
ENABLE_GUILE_COOT=no
build_type=
fi
# better do with argv/case or similar
make_clean_coot=
if [ "$1" = "clean" ] ; then
make_clean_coot=yes
fi
if [ "$2" = "clean" ] ; then
make_clean_coot=yes
fi
# better do with argv/case or similar
make_from_scratch=
if [ "$1" = "veryclean" ] ; then
make_from_scratch=yes
fi
if [ "$2" = "veryclean" ] ; then
make_from_scratch=yes
fi
# Set the host and the OS.
# Fairly fundamental.
#
OS=`uname`
HOST=`hostname`
HOST=`echo $HOSTNAME | tr '[A-Z]' '[a-z]'`
# Do we need to use a proxy server to get documents from the web? (set
# to 1 if we do)
use_proxy=${use_proxy:=}
# if we do need a proxy then we should give the proxy host and port too:
proxy_host=${proxy_host:=myproxy.com}
proxy_port=${proxy_port:=800}
no_proxy=${no_proxy:=".corp.net.com"}
# This is where the compiled binaries/libraries/data get installed:
# Note that the directory name must NOT end in a /
#
AUTOBUILD_INSTALLED=${AUTOBUILD_INSTALLED:=${HOME}/autobuild/${OS}-${HOST}}
# or perhaps, for the adventurous:
#AUTOBUILD_INSTALLED=$CCP4_MASTER
# This is where the actual build (compilation) master directory is:
# a temporary or scratch directory would be sensible.
#
# AUTOBUILD_BUILD=${HOME}/autobuild
# I'm putting my build on "scratch space"
AUTOBUILD_BUILD=${AUTOBUILD_BUILD:=$HOME/autobuild}
# This is where the build logs go:
# suggested value:
# LOGS=$AUTOBUILD_BUILD/logs
# but I want to put my log file on the web, so I put them here:
LOGS=${LOGS:=$HOME/public_html/build-logs/${OS}-${HOST}}
PUBLIC_HTML_LOGS=/z/build-logs
# set this to "no" if you don't want to compile the pre-release code.
# build_coot_prerelease=
build_coot_prerelease=${build_coot_prerelease:=1}
# We shall we check dependencies?
#
# Should we look for gtk etc on the system or only in the installed
# build directory? We want to do the first if we are a person using
# this build script to build coot themselves and we want to do the
# second to build a external-dependency-free coot build (like making
# the binary tars distributed from York).
# check_dependencies_in_install_only=
check_dependencies_in_install_only=1
# get build specials, e.g. change the compiler or the compiler options
# (e.g build for debugging), extra libraries etc setup LD_LIBRARY_DIR
# (or whatever) to include the autobuild library dir so that
# intermediate (configure compile) programs run and the addition to
# the path of GNU make and wget.
#
# use this to specify config_extras
#
# options are: GL_prefix, e.g. SunOS has Mesa Graphics - this is
# where to find them:
# glut_prefix, optionally can use freeglut
#
# Suggested value: comment out this line
specs=${specs:=$HOME/autobuild/build-scripts/${HOST}-specials}
# Make nightly binary tarballs?
# You probably don't want to do this, so recommended is do_nightlies=0
do_nightlies=${do_nightlies:=1}
# if you do want to build them where should they go?
# NIGHTLY_DEST_DIR=$AUTOBUILD_BUILD
NIGHTLY_DEST_DIR=${NIGHTLY_DEST_DIR:=${HOME}/public_html/software/binaries/pre-release}
# if we are not building a nightly/pre-release, i.e. this is a binary
# for a stable release, they go somewhere else:
#
STABLE_DEST_DIR=${STABLE_DEST_DIR:=${HOME}/public_html/software/binaries/stable}
# When we fail to extract the correct tar file from the web site, what
# shall we build instead?
#
fallback_coot_version=coot-0.8
# For windows shared and enhanced Ligand compilation
#
# set this to "yes", i.e. 1 if you want to compile wth enhanced ligand
#
build_enhanced_ligand=${build_enhanced_ligand:=0}
build_shared=${build_shared:=0}
# LE needs shared, so set this too then
if [ $build_enhanced_ligand = 1 ] ; then
build_shared=1
build_boost=1
build_rdkit=1
else
build_boost=0
build_rdkit=0
fi
if [ $build_shared = 1 ] ; then
shared_static_flag="--enable-shared --disable-static"
else
shared_static_flag="--disable-shared"
fi
# not shared yet
shared_lib_ext=dll
# ----------------------------------------------------------------
# End of tinkering with parameters.
# ----------------------------------------------------------------
# First, check that this is bash.
#
if [ "$BASH" = "" ] ; then
echo this shell is not bash\!
echo this script must be run with bash\!
exit
fi
# now the functions:
function mkdir_maybe {
dir=$1
if [ ! -e "$dir" ] ; then
mkdir $dir
fi
}
# Give args: prefix-dir and (based on is-static-flag) either
# "clear-static" or "clear-dynamic"
#
function post_install_slim {
echo we are slimming directory $1
fat_dir="$1"
cleaned_dir="$2"
clear_type="$3"
echo fat_dir is $fat_dir
echo clear_type is $clear_type
echo cleaned_dir is $cleaned_dir
mkdir_maybe $cleaned_dir
mkdir_maybe $cleaned_dir/bin
mkdir_maybe $cleaned_dir/lib
lib_sos=`cd $fat_dir && ls -1 lib/lib*.so*`
lib_as=`cd $fat_dir && ls -1 lib/lib*.a`
if [ "$clear_type" = "clear-dynamic" ] ; then
keep_lib_archs="$lib_as"
fi
if [ "$clear_type" = "clear-static" ] ; then
keep_lib_archs="$lib_sos"
fi
for file in etc html info man share bin/coot bin/coot-real \
bin/findwaters bin/findwaters-real bin/findligand bin/findligand-real \
bin/guile lib/$python_version $keep_lib_archs ;
do
dn=`dirname $file`
if [ -e $fat_dir/$file ] ; then
echo rsync -axr $fat_dir/$file $cleaned_dir/$dn
rsync -axr $fat_dir/$file $cleaned_dir/$dn
else
echo $fat_dir/$file does not exist
fi
done
echo done rsyncing.
}
function make_tar {
echo in make_tar args: $1 $2
echo in make_tar: in dir: $PWD
tar_dir=$1
tar_file_name=$2
cd $install_top_dir/..
if [ -e $tar_dir ] ; then
echo taring nightly... from $tar_dir to $tar_file_name
tar czf $tar_file_name $tar_dir
status=$?
if [ "$status" != 0 ] ; then
echo ERROR:: tar czf $tar_file_name $tar_dir failed.
echo ERROR:: while in directory $(pwd)
echo ERROR:: tar failed > $tar_file_name.md5sum
rm $tar_file_name
else
md5sum $tar_file_name > $tar_file_name.md5sum
/bin/ls -l $tar_file_name >> $tar_file_name.md5sum
echo done tar successfully.
fi
else
echo ERROR:: tar target directory $tar_dir does not exist.
fi
}
function setup_ccp4 {
# we have access to $OS and $arch.
if test "$OS" = Linux ; then
setup_file=/y/programs/xtal/ccp4-6.0/ccp4-6.0/include/ccp4.setup-sh
if test -e $setup_file ; then
. $setup_file
fi
setup_file=/lmb/dorset/linux_software/ccp4-6.0/include/ccp4.setup-bash
if test -e $setup_file ; then
. $setup_file
fi
fi
if test "$OS" = Darwin ; then
. /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh
fi
}
# exit
function my_exit {
exit_arg=$1
shift
extra_args=$*
# remove evtl. existing coot-version files
# and installer variable file
rm -f $install_top_dir/coot-version
# even if failed
# we write a number of variables to a file which we import in the
# masta script so that we preserve these
# first remove an the old file
var_file=${HOME}/wincoot-installer-variables
echo deleting $var_file
rm -f $var_file
echo LOGS=${LOGS} > $var_file
echo NIGHTLY_DEST_DIR=${NIGHTLY_DEST_DIR} >> $var_file
echo wincoot_version=$wincoot_version >> $var_file
echo build_coot_prerelease=$build_coot_prerelease >> $var_file
echo coot_build_status=$coot_build_status >> $var_file
echo coot_test_status=$coot_test_status >> $var_file
echo binary_type_latest=$binary_type_latest >> $var_file
echo HOSTLOG_STUB=$compilers_dir${build_type} >> $var_file
echo fail-build $extra_args > $LOGS/gtk2${build_type}-test-status
if [ -e $LOGS/gtk2${build_type}-build-status ] ; then
rm $LOGS/gtk2${build_type}-build-status
fi
exit $exit_arg
}
# Return 0 on success, 1 on failure (or not tested)
#
#
# This can only be run when the coot tar file and greg tests have been
# untared (in this particular build)
#
# we should be in the directory where coot was untarred for building
# when this function was called.
#
function test_coot_guile {
echo testing with greg
echo testing with greg >&2
echo currently we are here:
pwd
date
if [ "$1" != "" ] ; then
coot_binary=$1
else
coot_binary=$install_top_dir/libexec/coot-bin
fi
if test "$run_tests" = true ; then
# let's test our new coot
# the greg tests are where the coot source code was untarred.
#
if [ ! -d greg-tests ] ; then
echo greg-tests dir missing in this directory:
pwd
return 1
fi
setup_ccp4
cat <<EOF > command-line-greg.scm
(use-modules (ice-9 greg))
(set! greg-tools (list "greg-tests"))
(set! greg-debug #t)
(set! greg-verbose 5)
(let ((r (greg-test-run)))
(if r
(coot-real-exit 0)
(coot-real-exit 1)))
EOF
echo $install_top_dir/bin/coot --no-graphics --script command-line-greg.scm
$install_top_dir/bin/coot --no-graphics --script command-line-greg.scm
status=$?
if [ $status = 0 ] ; then
echo test_coot: coot test passed
return 0
else
echo test_coot: coot test failed
return 1
fi
else
echo run_tests is not true, not testing.
return 1
fi
}
# Return 0 on success, 1 on failure (or not tested)
#
# we should be in the directory where coot was untarred for building
# when this function was called.
#
function test_coot_python {
echo testing with python unittest
echo currently we are here:
pwd
date
if [ "$1" != "" ] ; then
coot_binary=$1
else
coot_binary=$install_top_dir/libexec/coot-bin
fi
if test "$run_tests" = true ; then
# let's test our new coot
# first clean up coot-backup otherwise we'll fill up the disk
echo removing old backup-files in coot-backup
rm coot-backup/*
# for python build we need to set COOT_PYTHON_DIR and COOT_HOME
COOT_PYTHON_DIR=$install_top_dir/python27/lib/site-packages/coot
COOT_HOME=$HOME
# add lib to path for rdkit and boost
PATH=$install_top_dir/lib:$PATH
PYTHONPATH=$COOT_PYTHON_DIR
PYTHONHOME=$install_top_dir/python27
export PYTHONPATH
export PYTHONHOME
export COOT_PYTHON_DIR
export COOT_HOME
echo $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py
$install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py
status=$?
if [ $status = 0 ] ; then
echo test_coot_python: coot test passed
return 0
else
echo test_coot_python: coot test failed
return 1
fi
else
echo run_tests is not true, not testing in python
return 1
fi
}
function fixup_libcurl {
sed s,-L/usr/lib,, curl-config > curl-config.tmp
mv curl-config.tmp curl-config
sed s,-L/usr/lib,, lib/libcurl.la > lib/libcurl.la.tmp
mv lib/libcurl.la.tmp lib/libcurl.la
}
# now on to some code!
if [ "$use_proxy" = 1 ] ; then
# establish proxy settings
printf "Proxy user: "
read proxy_user
printf "Proxy password: "
read -s proxy_pass
printf "\n"
http_proxy="http://${proxy_user}:${proxy_pass}@${proxy_host}:${proxy_port}/"
https_proxy="http://${proxy_user}:${proxy_pass}@${proxy_host}:${proxy_port}/"
ftp_proxy="http://${proxy_user}:${proxy_pass}@${proxy_host}:${proxy_port}/"
ssl_proxy="http://${proxy_user}:${proxy_pass}@${proxy_host}:${proxy_port}/"
export http_proxy https_proxy ftp_proxy ssl_proxy no_proxy
fi
# use the right (GNU) tar and provide the path to wget (needed
# for downloads) and to GNU make - (which is necesary for python
# at least).
#
# So that python and the *-configs are found when it is installed:
# A bit of a kludge because we do testing for pre-release later.
# It's a logical mess.
#
#we shall add the PATH for python here too:
# BL says: not sure if we really want the pre install PATH to be set here too
#if test "$build_coot_prerelease" = 1 ; then
# PATH=${AUTOBUILD_INSTALLED}-pre-release-gtk2${build_type}/bin:${AUTOBUILD_INSTALLED}-pre-release-gtk2${build_type}/python2.5:$PATH
#else
# PATH=$AUTOBUILD_INSTALLED-gtk2$build_type/bin:$AUTOBUILD_INSTALLED-gtk2$build_type/python2.5:$PATH
#fi
#PATH=$PATH:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin:
#PATH=$PATH:/etc:/usr/etc
#
#export PATH
#echo PATH is now: $PATH
echo AUTOBUILD_BUILD is $AUTOBUILD_BUILD
# This is where the sources downloaded from network go:
AUTOBUILD_SOURCES=${AUTOBUILD_BUILD}/sources
echo AUTOBUILD_SOURCES is $AUTOBUILD_SOURCES
if (! test -d ${AUTOBUILD_SOURCES}) ; then
mkdir -p ${AUTOBUILD_SOURCES}
fi
# now make the build logs directory
mkdir -p $LOGS
systype=unknown
update_libtool=0
# malloc.h business, Darwin does not have malloc.h
# used in the gtk_canvas build
have_malloc=1
if test "$OS" = "Darwin" ; then
have_malloc=0
fix_ulong=1
update_libtool=1
update_config_guess_sub=1
shared_static_flag="--disable-static"
shared_lib_ext=dylib
need_readline_patch=1
# uname -a gives processor type in last field on Darwin
processor=$(uname -a | awk '{print $(NF)}')
need_gtk_imlib_libtool_fix=1
if test "$processor" = "i386" ; then
need_glib_getpwuid_fix=1
need_glib_poll_fix=1
need_gtk_canvas_patch=1
fi
osversion=$(sw_vers -productVersion)
systype=MacOSX-${osversion}-${processor}
fi
# redirect the output.
#
# exec 2>&1 > $LOGS/$HOST.log
# Try not to redirect standard out so that it goes to
# the sub-shell log? (testing)
echo INFO:: redirecting std output to $LOGS/gtk2${build_type}-build.log
exec > $LOGS/gtk2${build_type}-build.log
echo This is script version $script_version for Gtk2
# local tinkering because our sgi runs out of room on /tmp on compiling
if [ $HOST = batman ] ; then
TMPDIR=$HOME/tmp
export TMPDIR
fi
date
#
if [ -n "$specs" ] ; then
if [ -e "$specs" ] ; then
echo running these extras:
echo . --------------------------------
cat "$specs"
. "$specs"
echo . --------------------------------
fi
fi
#initially unset:
architecture=
if test $OS = Linux ; then
architecture=$(uname -i)
# uname -i and uname -p (strangely) return unknown on my ubuntu
if test $architecture = unknown ; then
architecture=$(uname -m)
fi
fi
# now architecture is something like i386 or x86_64
# now test for 64 bit Linux:
if test "$OS" = "Linux" ; then
processor=$(uname -a | awk '{print $NF}')
# on my Redhat i386, uname returns:
# Linux kalypso 2.6.12-1.1398_FC4 #1 Fri Jul 15 00:52:32 EDT 2005 i686 athlon i386 GNU/Linux
# 64 bit Ubuntu:
# Linux kalypso 2.6.22-14-generic #1 SMP Sun Oct 14 21:45:15 GMT 2007 x86_64 GNU/Linux
# from that I presume we need $(NF-2) to get the arch (not NF-1). Eh?
# arch=`uname -a | awk '{print $(NF-1)}'`
arch=$(uname -a | awk '{print $(NF-1)}')
echo currently architecture is $architecture
if test "$architecture" = x86_64 -o "$architecture" = ia64 ; then
update_libtool=1
update_config_guess_sub=1
else
echo this is not a 64 bit machine
fi
fi
if test $OS = Linux ; then
if [ -e /bin/rpm ] ; then
if rpm -a ; then
for i in fedora-release redhat-release redhat-release-workstation centos-release sl-release openSUSE-release ; do
dist=`rpm -q --qf '%{name}' ${i}`
echo dist is $dist
dist=`rpm -q --qf '%{name}' ${i}`
if test $? = 0 ; then
dist_name=$(echo ${dist} | sed -e 's/\-release//g' -e 's/\-workstation//g')
dist_ver=$(rpm -q --qf '%{version}' ${i})
break
else
dist_name='unknown'
fi
done
else
dist_name='unknown'
fi
fi
case ${dist_name} in
redhat* )
case ${dist_ver} in
[0-9] | [0-9].[0-9]* )
systype=${architecture}-redhat-${dist_ver}
;;
* )
systype=${architecture}-rhel-$(echo ${dist_ver} | sed s/[A-Za-z]//g)
if [ $arch = x86_64 ] ; then
if [ $dist_ver = 4WS ] ; then
echo RedHat 4 Linux x86_64 detected. need to update libtool
update_libtool=1
# stupid la file of libcur puts /usr/lib in the link path (early). This causes link
# problems on 64 bit RHEL4. So lets fix curl-config and libcurl.la
post_process_libcurl=1
fi
fi
;;
esac
;;
fedora | centos | openSUSE )
systype=${architecture}-${dist_name}-${dist_ver}
;;
sl )
systype=${architecture}-scientific-linux-${dist_ver}
;;
* )
if test -r /etc/issue; then
dist_name=$(awk 'NR==1{print tolower($1)}' /etc/issue)
if [ "$dist_name" = "debian" ] ; then
dist_ver=$(awk 'NR==1{x=tolower($2); y=tolower($3); gsub("/","-",x); gsub("/","-",y); print x "-" y}' /etc/issue)
else
dist_ver=$(awk 'NR==1{x=tolower($2); gsub("/","-",x); print x}' /etc/issue)
fi
systype=${architecture}-${dist_name}-${dist_ver}
else
systype=${architecture}-unknown-Linux
fi
;;
esac
fi
if test $OS = IRIX64 ; then
osversion=`uname -r`
systype=${osversion}-sgi
fi
if test $OS = IRIX ; then
osversion=`uname -r`
systype=${osversion}-sgi
fi
if test $OS = OSF1 ; then
osversion=`uname -r | sed s/V//g`
systype=${osversion}-OSF1
fi
# maybe all can be case
case "$OS" in
MINGW*)
systype=`uname -m`
architecture=`uname -m`
;;
esac
echo systype: $systype
echo update_libtool: $update_libtool
echo update_config_guess_sub: $update_config_guess_sub
# give us some diagnostic shell information:
# (what extra things did $specs give us?)
#
if [ "$use_proxy" = 1 ] ; then
echo no diagnostic variables, we are using a proxy.
else
set
fi
# Do we link with sqlite (for the ligands database)?
# We allow the calling script to set use_sqlite=yes
use_sqlite=${use_sqlite:=no}
if [ "$use_sqlite" = "yes" ] ; then
sqlite_config_args=--with-sqlite3
else
sqlite_config_args=
fi
# We want to add some compiler info in the directory name.
# If CC is set, use that,
# If not, try gcc,
# if not, try cc
#
# Similarly for the c++ compiler info
# If CXX is set, use that
# if not, try g++
# if not, try c++
if [ -n "$CC" ] ; then
# CC was set
gcctest=`$CC --version | awk 'NR==1 {print $2}'`
if [ "$gcctest" != "(GCC)" ] ; then
# but not gcc
v=$CC-`$CC -v`
if [ $? -ne 0 ] ; then
v="missing_version"
fi
else
# gcc
v=$CC-`$CC --version | awk 'NR==1 {print $3}'`
fi
else
# CC not set
v=gcc-`gcc -dumpversion | head -1`
if [ $? -ne 0 ] ; then
# not gcc
# try cc
v=cc-`cc -v`
if [ $? -ne 0 ] ; then
v="missing_version"
fi
fi
fi
if [ -n "$CXX" ] ; then
# CXX was set
gxxtest=$($CXX --version | awk 'NR==1 {print $2}')
# typically gxxtest is set to "(GCC)", but not on Ubuntu, where the line is:
# g++ (Ubuntu 4.4.3-4ubuntu5.1) 4.4.3
# Scientific Linux:
# g++ (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
# RHEL 6:
# g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3)
echo gxxtest: $gxxtest
if [ "$gxxtest" != "(GCC)" ] ; then
# but not g++ (?). Maybe it was Ubuntu...
case "$gxxtest" in
*[Uu]buntu*)
w=$($CXX --version | head -1 | awk '{print $3}' | tr -d ')')
;;
*)
w=$CXX-$($CXX -v | head -1 | sed 's/ / /g')