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Moving the tomcat FROM container to :9-jre11-slim means that debian sid is used, which installs HMMER 3.2 instead of 3.1, which breaks the structure generation part with this error in the 2.0 release:
Caused by: java.lang.NumberFormatException: For input string: "N/A"
at java.base/java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.base/java.lang.Integer.parseInt(Integer.java:638)
at java.base/java.lang.Integer.parseInt(Integer.java:770)
at uk.ac.ebi.cheminformatics.pks.parser.FeatureFileLine.<init>(FeatureFileLine.java:100)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:195)
at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
at java.base/java.nio.file.FileChannelLinesSpliterator.forEachRemaining(FileChannelLinesSpliterator.java:114)
The text was updated successfully, but these errors were encountered:
pcm32
changed the title
BEWARE Using jre11-slim based tomcat breaks strcuture generation
BEWARE Using jre11-slim based tomcat breaks structure generation
Nov 4, 2018
Moving the tomcat FROM container to :9-jre11-slim means that debian sid is used, which installs HMMER 3.2 instead of 3.1, which breaks the structure generation part with this error in the 2.0 release:
The text was updated successfully, but these errors were encountered: