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BEWARE Using jre11-slim based tomcat breaks structure generation #1

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pcm32 opened this issue Nov 4, 2018 · 0 comments
Open

BEWARE Using jre11-slim based tomcat breaks structure generation #1

pcm32 opened this issue Nov 4, 2018 · 0 comments

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@pcm32
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pcm32 commented Nov 4, 2018

Moving the tomcat FROM container to :9-jre11-slim means that debian sid is used, which installs HMMER 3.2 instead of 3.1, which breaks the structure generation part with this error in the 2.0 release:

Caused by: java.lang.NumberFormatException: For input string: "N/A"
	at java.base/java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
	at java.base/java.lang.Integer.parseInt(Integer.java:638)
	at java.base/java.lang.Integer.parseInt(Integer.java:770)
	at uk.ac.ebi.cheminformatics.pks.parser.FeatureFileLine.<init>(FeatureFileLine.java:100)
	at java.base/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:195)
	at java.base/java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:177)
	at java.base/java.nio.file.FileChannelLinesSpliterator.forEachRemaining(FileChannelLinesSpliterator.java:114)
@pcm32 pcm32 changed the title BEWARE Using jre11-slim based tomcat breaks strcuture generation BEWARE Using jre11-slim based tomcat breaks structure generation Nov 4, 2018
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