readme.md

IHEC wrapper for ENCODE ChIP-Seq pipeline.

This is the IHEC wrapper around the ENCODE ChIP-Seq pipeline that captures that IHEC specific configurations for analyzing ChIP-Seq data through the ENCODE pipeline.

For an introduction to the ENCODE ChIP-Seq pipeline see: ENCODE-DCC/chip-seq-pipeline2

Please see the documentation available here to set up and test the pipeline.

Also refer to IHEC standard workflows