conda-env.yml

name: bpnet
channels:
- conda-forge
- bioconda
dependencies:
- python=3.7
- git

- bioconda::pybedtools>=0.7.10
- bioconda::bedtools>=2.27.1
- bioconda::pybigwig>=0.3.10
- bioconda::pysam>=0.14.0
- bioconda::genomelake=0.1.4

#- cython=0.29.22
- h5py=2.10.0
#- numpy=1.19.2

- pandas=1.1.5
- fastparquet=0.5.0
- python-snappy=0.6.0
- pip=21.0.1
- nb_conda=2.2.1
- tensorflow=1.14
- keras=2.3.1

- kipoi=0.6.25
- kipoiseq=0.3.4
- pip:
  - git+https://github.com/kundajelab/DeepExplain.git
  - git+https://github.com/pauldrinn/bpnet.git