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.gitlab-ci.yml
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###########################################################################
# This file defines the build process for fsleyes, as hosted at:
#
# https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes
#
# 0. docker: (Re-)build docker test images (upstream only, manually
# invoked)
#
# 1. test: Unit tests
#
# 2. style: Check coding style
#
# 3. doc: Building/uploading user and API documentation using
# GitLab Pages.
#
# 4. build: Building source and wheel distributions for
# releases (tags on upstream only)
#
# 5. deploy: Uploading the source and wheel distributions
# PyPI (tags on upstream only, manually invoked)
#
# Custom docker images are used for several jobs - these images are
# available at:
#
# https://hub.docker.com/u/pauldmccarthy/
#
# These images can be re-built by manually invoked CI jobs defined within
# the "docker" stage.
#
# The test and style stages are executed on all branches of upstream and
# fork repositories.
#
# The doc stage executed on release branches of the upstream repository.
#
# The build and deploy stages are only executed on release tags on
# the upstream repository.
#
# Source and wheel distributions are deployed to pypi for release tags.
###########################################################################
stages:
- docker
- test
- style
- doc
- build
- deploy
#################################################################################
# A number of variables must be set for the jobs to work. The following
# variables are implicitly defined in any gitlab CI job:
#
# - CI_PROJECT_PATH - gitlab namespace/project
# - CI_COMMIT_REF_NAME - branch name, provided by gitlab
# - CI_COMMIT_TAG - present if build is running on a tag
#
# These variables must be explicitly set as "secret" variables:
#
# - SSH_PRIVATE_KEY_FSL_DOWNLOAD - private key for downloading some FSL
# files from a remote server (FSL_HOST)
#
# - FSL_HOST: - Username@host to download FSL data from
# (e.g. "[email protected]")
#
# - FSL_ATLAS_DIR: - Location of the FSL atlas data on
# FSL_HOST.
#
# - TWINE_USERNAME: - Username to use when uploading to pypi
#
# - TWINE_PASSWORD: - Password to use when uploading to pypi
#
# - TWINE_REPOSITORY_URL: - Pypi repository to upload to
#
# - ZENODO_URL: - Zenodo URL to deposit release file to.
#
# - ZENODO_TOKEN: - Zenodo access token.
#
# - ZENODO_DEPOSIT_ID: - Deposit ID of previous Zenodo deposit.
###############################################################################
variables:
UPSTREAM_PROJECT: "fsl/fsleyes/fsleyes"
UPSTREAM_URL: "[email protected]"
####################################
# These anchors are used to restrict
# when and where jobs are executed.
####################################
.only_release_branches: &only_release_branches
only:
- /^v.+$/@fsl/fsleyes/fsleyes
.only_releases: &only_releases
only:
- tags@fsl/fsleyes/fsleyes
.setup_ssh: &setup_ssh
before_script:
- bash ./.ci/setup_ssh.sh
##############
# Docker stage
##############
# (Re-)builds docker images for testing.
.build-docker-image:
stage: docker
image: docker:latest
tags:
- docker_build
services:
- docker:dind
when: manual
allow_failure: true
script:
- mkdir -p $HOME/.docker/
- echo $DOCKER_AUTH_CONFIG > $HOME/.docker/config.json
- TAG="$(date +%Y%m%d).${CI_COMMIT_SHORT_SHA}"
- IMAGE="pauldmccarthy/$(basename $BUILDDIR)"
- DOCKERFILE=${BUILDDIR}/Dockerfile
- docker build -t "${IMAGE}:${TAG}" -t "${IMAGE}:latest" -f ${DOCKERFILE} ./.docker
- docker push "${IMAGE}:${TAG}"
- docker push "${IMAGE}:latest"
build-docker-image-fsleyes-py37-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py37-wxpy4-gtk3
build-docker-image-fsleyes-py38-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py38-wxpy4-gtk3
build-docker-image-fsleyes-py39-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py39-wxpy4-gtk3
build-docker-image-fsleyes-py310-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py310-wxpy4-gtk3
build-docker-image-fsleyes-py311-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py311-wxpy4-gtk3
build-docker-image-fsleyes-py312-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py312-wxpy4-gtk3
build-docker-image-fsleyes-py313-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py313-wxpy4-gtk3
############
# Test stage
############
.test_rules: &test_rules
rules:
# Set FSLEYES_SKIP_TESTS to skip tests
- if: '$FSLEYES_SKIP_TESTS != null'
when: never
# Don't test if "[skip-tests]"
# is in the commit message
- if: '$CI_COMMIT_MESSAGE =~ /\[skip-tests\]/'
when: never
- if: '$CI_PIPELINE_SOURCE == "merge_request_event"'
when: on_success
- if: '$CI_PIPELINE_SOURCE == "web"'
when: on_success
# some test jobs are only run on the upstream repo
.test_rules_upstream: &test_rules_upstream
rules:
# Releases are just tags on a release
# branch, so we don't need to test them.
- if: '$CI_COMMIT_TAG != null'
when: never
# Don't test if "[skip-tests]"
# is in the commit message
- if: '$CI_COMMIT_MESSAGE =~ /\[skip-tests\]/'
when: never
# Set FSLEYES_SKIP_TESTS to skip tests
- if: '$FSLEYES_SKIP_TESTS != null'
when: never
- if: '$CI_PROJECT_PATH != $UPSTREAM_PROJECT'
when: never
- if: $CI_PROJECT_PATH == $UPSTREAM_PROJECT && $CI_COMMIT_BRANCH =~ /^v.+$/
when: on_success
- if: '$CI_PIPELINE_SOURCE == "web"'
when: on_success
.test: &test_template
<<: *setup_ssh
<<: *test_rules
tags:
- docker
script:
- bash ./.ci/test_template.sh
artifacts:
when: on_failure
expire_in: 1 day
paths:
- failures/
# offscreen tests only on macos
test:macos:
<<: *test_rules
stage: test
tags:
- macOS
- shell
variables:
MACOS_OVERLAY_TEST: 1
script:
- bash ./.ci/test_template.sh
artifacts:
when: on_failure
expire_in: 1 day
paths:
- failures/
test:3.10:
stage: test
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_template
<<: *test_rules
test:3.11:
stage: test
image: pauldmccarthy/fsleyes-py311-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:3.12:
stage: test
image: pauldmccarthy/fsleyes-py312-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:3.13:
stage: test
image: pauldmccarthy/fsleyes-py313-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:build-pypi-dist:
stage: test
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_rules
tags:
- docker
script:
- source /test.venv/bin/activate
- bash ./.ci/build_pypi_dist.sh
#############
# Style stage
#############
style:
stage: style
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_template
variables:
TEST_STYLE: "true"
#############
# Pages stage
#############
pages:
<<: *only_release_branches
tags:
- docker
stage: doc
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
script:
- bash ./.ci/build_userdoc.sh
- bash ./.ci/build_apidoc.sh
artifacts:
paths:
- public
#############
# Build stage
#############
build-pypi-dist:
<<: *only_releases
stage: build
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
tags:
- docker
# Make sure that the version in the code is
# up to date (i.e. equal to the tag name).
before_script:
- bash ./.ci/check_version.sh
script:
- bash ./.ci/build_pypi_dist.sh
artifacts:
expire_in: 1 day
paths:
- dist/*tar.gz
- dist/*whl
##############
# Deploy stage
##############
deploy-pypi:
<<: *only_releases
<<: *setup_ssh
stage: deploy
when: manual
image: python:3.10
tags:
- docker
dependencies:
- build-pypi-dist
script:
- bash ./.ci/deploy_pypi.sh
deploy-zenodo:
<<: *only_releases
<<: *setup_ssh
stage: deploy
when: manual
image: python:3.10
tags:
- docker
dependencies:
- build-pypi-dist
script:
- bash ./.ci/zenodo_deposit.sh fsleyes "$ZENODO_URL" "$ZENODO_TOKEN" "$ZENODO_DEPOSIT_ID"