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climpred_testing.yml
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name: CI # based on https://github.com/pydata/xarray/blob/master/.github/workflows/ci.yaml
on:
pull_request:
schedule:
- cron: "0 23 * * 0" # Sun 23:00 UTC
workflow_dispatch: # allows you to trigger the workflow run manually
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
detect-ci-trigger:
name: detect ci trigger
runs-on: ubuntu-latest
if: github.event_name == 'push' || github.event_name == 'pull_request'
outputs:
triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 2
- uses: xarray-contrib/[email protected]
id: detect-trigger
with:
keyword: "[skip-ci]"
minimum-test: # Runs testing suite with minimal dependencies
name: Test minimum dependencies, python 3.9
runs-on: ubuntu-latest
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0 # Fetch all history for all branches and tags.
- name: Set up conda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: false
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: climpred-minimum-tests
python-version: 3.9
- name: Set up conda environment
run: |
mamba env update -f ci/requirements/minimum-tests.yml
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: Cache datasets # pytest-xdist fails otherwise
run: |
python -c "import climpred; climpred.tutorial._cache_all()"
- name: Run tests
run: pytest -n 4 --durations=20
maximum-test: # Runs testing suite with all optional dependencies
name: Test optional dependencies, python ${{ matrix.python-version }}
runs-on: ubuntu-latest
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
# python-version: [ "3.9", "3.10"]
env: [""]
include:
- env: "climpred-maximum-tests"
python-version: "3.9"
os: ubuntu-latest
- env: "climpred-maximum-tests"
python-version: "3.10"
os: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0 # Fetch all history for all branches and tags.
- name: Setup micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: ci/requirements/maximum-tests.yml
environment-name: climpred-maximum-tests
cache-environment: true
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
create-args: >-
python=${{matrix.python-version}}
conda
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: install
run: |
python -m pip install -e .[complete]
conda list xclim
- name: Cache datasets # pytest-xdist fails otherwise
run: python -c "import climpred; climpred.tutorial._cache_all()"
- name: Run tests
run: pytest -n 4 --durations=20 --cov=climpred --cov-report=xml
- name: Upload coverage to codecov
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
fail_ci_if_error: false
doctest: # tests all docstrings
name: Doctests
runs-on: "ubuntu-latest"
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- uses: conda-incubator/setup-miniconda@v2
with:
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: climpred-maximum-tests
auto-update-conda: false
python-version: 3.9
- name: Install conda dependencies
run: |
mamba env update -f ci/requirements/maximum-tests.yml
- name: Install climpred
run: |
python -m pip install -e .[complete]
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: Run doctests
run: |
python -m pytest --doctest-modules climpred --ignore climpred/tests
notebooks: # Checks that pre-compiled notebooks in docs still work.
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: false
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: climpred-docs
python-version: 3.9
- name: Set up conda environment
run: |
mamba env update -f ci/requirements/docs.yml
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: Test notebooks in docs
run: |
pushd docs
nbstripout source/*.ipynb source/examples/decadal/*.ipynb source/examples/monseas/*.ipynb examples/subseasonal/*ly-subx-example.html
make -j4 html
popd