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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 403 44

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 198 41

  3. impg impg Public

    implicit pangenome graph

    Rust 45 5

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 57 7

Repositories

Showing 10 of 62 repositories
  • gfalace Public

    lace up GFA files using panSN path name sub-ranges to coordinate the lacing

    pangenome/gfalace’s past year of commit activity
    Rust 6 MIT 0 1 1 Updated Dec 14, 2024
  • gafpack Public

    convert variation graph alignments to coverage maps over nodes

    pangenome/gafpack’s past year of commit activity
    Rust 21 MIT 2 0 0 Updated Dec 10, 2024
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 45 MIT 5 2 1 Updated Dec 9, 2024
  • MemPanG25 Public Forked from pangenome/MemPanG24

    Computational Pangenomics in Memphis

    pangenome/MemPanG25’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated Nov 30, 2024
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 198 MIT 41 42 (1 issue needs help) 8 Updated Nov 29, 2024
  • pggb Public

    the pangenome graph builder

    pangenome/pggb’s past year of commit activity
    Shell 403 MIT 44 36 0 Updated Nov 25, 2024
  • smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    pangenome/smoothxg’s past year of commit activity
    C++ 57 7 7 2 Updated Nov 16, 2024
  • HumanPangenomeBYOD2024 Public

    Material for the Human Pangenome Bring Your Own Data (BYOD) analysis Workshop 2024, October 21-25 in Cape Town, South Africa.

    pangenome/HumanPangenomeBYOD2024’s past year of commit activity
    7 MIT 1 0 0 Updated Oct 29, 2024
  • genotypify Public

    Genotyping lots of samples with big pangenomes

    pangenome/genotypify’s past year of commit activity
    5 MIT 0 0 0 Updated Oct 29, 2024
  • PanSN-spec Public

    Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes

    pangenome/PanSN-spec’s past year of commit activity
    33 1 3 1 Updated Oct 13, 2024
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