v1.2.6

What's Changed

• Allow AD instead of COV for minor populations by @mcolpus in #30

New Contributors

• @mcolpus made their first contribution in #30

Full Changelog: v1.2.5...v1.2.6

v1.2.5

What's Changed

• Style/black ruff by @JeremyWesthead in #28
• Additions to enable type checking of this as an import by @JeremyWesthead in #29

Full Changelog: v1.2.4...v1.2.5

v1.2.4

What's Changed

• fix: ensure minor populations aren't searched for in null calls by @JeremyWesthead in #26
• fix: Fix for oxfordmmm/gnomonicus#37 by @JeremyWesthead in #27

Full Changelog: v1.2.3...v1.2.4

v.1.2.3

What's Changed

• Fix for gnomonicus issue by @JeremyWesthead in #23
• Added fix for oxfordmmm/gnomonicus#31 by @JeremyWesthead in #25

Full Changelog: v1.2.2...v1.2.3

v1.2.2

What's Changed

• Vcf fix by @JeremyWesthead in #20
• Vcf fix by @JeremyWesthead in #21
• Fix to minor indel nc changes by @JeremyWesthead in #22

Full Changelog: v1.2.1...v1.2.2

v1.2.1

What's Changed

• Fixes for pulling out gene positions of large dels crossing genes by @JeremyWesthead in #19

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• Large deletions + VCF Evidence by @JeremyWesthead in #12
• Ensure position is recorded for split deletions by @JeremyWesthead in #13
• Cicd docs by @JeremyWesthead in #15
• Add fix to ensure VCF evidence is properly picked up for revcomp ins by @JeremyWesthead in #16
• Various fixes/improvements including minor AAs by @JeremyWesthead in #18

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Minor alleles by @JeremyWesthead in #8
• Various improvements to tests. Now at 100% coverage by @JeremyWesthead in #9
• Added various fixes by @JeremyWesthead in #10
• Minor fixes for minority populations by @JeremyWesthead in #11

Full Changelog: v1.0.15...v1.1.0

v1.0.15

Fixed an issue which caused invalid mutations if a deletion starts in a promoter of a gene, and passes the gene end.

v1.0.14

Bug fixes.

Ensures that GeneDifference.amino_acid_sequence is the same length as other difference arrays. This was changed with the introduction of including nucleotide SNPs in cases of synonymous AA SNPs. Now in cases of this, the amino_acid_sequence is correctly padding with None values in positions that these nucleotide SNPs are introduced.

Added fix for github actions to ensure only a single action is triggered by a release