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Request: Add info from the summary table on outbreak.info Mutation Reports #85

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starlagthornhill opened this issue Jan 26, 2022 · 1 comment

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@starlagthornhill
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I am trying to use this package to generate large tables which we are currently building manually. We need information which we are currently looking up on the Mutation Report pages on the outbreak.info site:

https://outbreak.info/situation-reports?pango&muts=S%3AT478K&loc=USA&loc=USA_US-NY&overlay=false

We would like to use the R package get the "cumulative prevalence" and "last date found" for individual mutations by location, as shown in the summary table on the above Mutation Report, so that I can use a script to generate these tables for us.

@starlagthornhill
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As an update: I worked out how to get the "last date found" from the data available in getPrevalence() by simply extracting the minimum date from the date column for the mutation I queried

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