diff --git a/IGenotyper/data/5-UTR.bed b/IGenotyper/data/5-UTR.bed
new file mode 100644
index 0000000..229a01b
--- /dev/null
+++ b/IGenotyper/data/5-UTR.bed
@@ -0,0 +1,80 @@
+chr2	88885396	88885571	IGKV4-1
+chr2	88897231	88897294	IGKV5-2
+chr2	89851790	89851790	IGKV2D-40
+chr2	89862481	89862504	IGKV1D-39
+chr2	89884739	89884739	IGKV1D-37
+chr2	89913981	89914070	IGKV1D-33
+chr2	89936858	89936893	IGKV2D-30
+chr2	89947511	89947541	IGKV2D-29
+chr2	89959978	89960014	IGKV2D-28
+chr2	89985921	89985951	IGKV2D-26
+chr2	90004796	90004826	IGKV2D-24
+chr2	90021566	90021633	IGKV6D-21
+chr2	90038847	90038944	IGKV3D-20
+chr2	90069661	90069687	IGKV6D-41
+chr2	90082634	90082815	IGKV1D-17
+chr2	90100235	90100262	IGKV1D-16
+chr2	90114837	90114886	IGKV3D-15
+chr2	90154072	90154097	IGKV1D-13
+chr2	90159839	90159859	IGKV1D-12
+chr2	90172801	90172898	IGKV3D-11
+chr2	90190192	90190212	IGKV1D-42
+chr2	90209872	90210053	IGKV1D-43
+chr2	90220726	90220907	IGKV1D-8
+chr2	90234811	90234836	IGKV3D-7
+chr2	88947776	88947957	IGKV1-5
+chr2	88966738	88966767	IGKV1-6
+chr2	88978984	88979081	IGKV3-7
+chr2	88992878	88992931	IGKV1-8
+chr2	89010457	89010515	IGKV1-9
+chr2	89027684	89027731	IGKV3-11
+chr2	89040698	89040745	IGKV1-12
+chr2	89085690	89085787	IGKV3-15
+chr2	89100334	89100361	IGKV1-16
+chr2	89117817	89117844	IGKV1-17
+chr2	89143108	89143160	IGKV3-20
+chr2	89160302	89160366	IGKV6-21
+chr2	89177130	89177160	IGKV2-24
+chr2	89213897	89213928	IGKV1-27
+chr2	89222431	89222461	IGKV2-28
+chr2	89245566	89245596	IGKV2-30
+chr2	89268475	89268506	IGKV1-33
+chr2	89297738	89297785	IGKV1-37
+chr2	89320099	89320146	IGKV1-39
+chr22	22030933	22030993	IGLV4-69
+chr22	22214806	22214806	IGLV10-54
+chr22	22098699	22098745	IGLV8-61
+chr22	22162198	22162198	IGLV4-60
+chr22	22195798	22195798	IGLV6-57
+chr22	22201662	22201674	IGLV11-55
+chr22	22318726	22318731	IGLV5-52
+chr22	22322471	22322507	IGLV1-51
+chr22	22327299	22327350	IGLV1-50
+chr22	22343186	22343223	IGLV9-49
+chr22	22352939	22352939	IGLV5-48
+chr22	22357738	22357794	IGLV1-47
+chr22	22369613	22369647	IGLV7-46
+chr22	22375985	22376013	IGLV5-45
+chr22	22380765	22380879	IGLV1-44
+chr22	22395017	22395051	IGLV7-43
+chr22	22409765	22409816	IGLV1-40
+chr22	22427539	22427544	IGLV5-37
+chr22	22431957	22431997	IGLV1-36
+chr22	22588154	22588212	IGLV2-33
+chr22	22594527	22594566	IGLV3-32
+chr22	22668287	22668325	IGLV3-27
+chr22	22686725	22686768	IGLV3-25
+chr22	22697788	22697950	IGLV2-23
+chr22	22704264	22704328	IGLV3-22
+chr22	22711688	22712418	IGLV3-21
+chr22	22720622	22720662	IGLV3-19
+chr22	22734606	22734619	IGLV2-18
+chr22	22747382	22747420	IGLV3-16
+chr22	22758699	22758740	IGLV2-14
+chr22	22771823	22771832	IGLV3-12
+chr22	22792490	22792532	IGLV2-11
+chr22	22811746	22811781	IGLV3-10
+chr22	22819009	22819124	IGLV3-9
+chr22	22822657	22822820	IGLV2-8
+chr22	22871506	22871538	IGLV4-3
+chr22	22880705	22880757	IGLV3-1
diff --git a/IGenotyper/data/gene_coords.bed b/IGenotyper/data/gene_coords.bed
index d85c3d6..d16c192 100644
--- a/IGenotyper/data/gene_coords.bed
+++ b/IGenotyper/data/gene_coords.bed
@@ -1,283 +1,411 @@
-chr14	21622284	21622567	TRAV1-1
-chr14	21643303	21643578	TRAV1-2
-chr14	21712569	21712843	TRAV2
-chr14	21724024	21724321	TRAV3
-chr14	21736694	21736982	TRAV4
-chr14	21749417	21749705	TRAV5
-chr14	21768792	21769080	TRAV6
-chr14	21783218	21783503	TRAV7
-chr14	21797591	21797886	TRAV8-1
-chr14	21811685	21811977	TRAV9-1
-chr14	21825784	21826075	TRAV10
-chr14	21841486	21841774	TRAV12-1
-chr14	21846926	21847221	TRAV8-2
-chr14	21852711	21853006	TRAV8-3
-chr14	21869077	21869365	TRAV13-1
-chr14	21888211	21888502	TRAV12-2
-chr14	21894735	21895030	TRAV8-4
-chr14	21918465	21918756	TRAV13-2
-chr14	21924350	21924651	TRAV14DV4
-chr14	21941365	21941657	TRAV9-2
-chr14	21965770	21966061	TRAV12-3
-chr14	21978825	21979120	TRAV8-6
-chr14	21990655	21990938	TRAV16
-chr14	21997883	21998168	TRAV17
-chr14	22003384	22003673	TRAV18
-chr14	22007880	22008181	TRAV19
-chr14	22040868	22041153	TRAV20
-chr14	22052766	22053056	TRAV21
-chr14	22070929	22071208	TRAV22
-chr14	22086649	22086961	TRAV23DV6
-chr14	22105558	22105846	TRAV24
-chr14	22112750	22113031	TRAV25
-chr14	22123997	22124285	TRAV26-1
-chr14	22132743	22133034	TRAV8-7
-chr14	22148351	22148633	TRAV27
-chr14	22163564	22163870	TRAV29DV5
-chr14	22168703	22168988	TRAV30
-chr14	22203081	22203368	TRAV26-2
-chr14	22207844	22208129	TRAV34
-chr14	22226966	22227254	TRAV36DV7
-chr14	22272262	22272563	TRAV38-1
-chr14	22281448	22281748	TRAV38-2DV8
-chr14	22304265	22304553	TRAV39
-chr14	22314645	22314919	TRAV40
-chr14	22320407	22320691	TRAV41
-chr14	22422743	22423042	TRDV2
-chr14	22438546	22438554	TRDD1
-chr14	22439006	22439015	TRDD2
-chr14	22449112	22449125	TRDD3
-chr14	22450088	22450139	TRDJ1
-chr14	22455248	22455296	TRDJ4
-chr14	22456688	22456742	TRDJ2
-chr14	22459097	22459156	TRDJ3
-chr14	22469041	22469344	TRDV3
-chr14	22475315	22475375	TRAJ61
-chr14	22476552	22476606	TRAJ59
-chr14	22477706	22477769	TRAJ58
-chr14	22478871	22478934	TRAJ57
-chr14	22479520	22479582	TRAJ56
-chr14	22482286	22482346	TRAJ54
-chr14	22483003	22483069	TRAJ53
-chr14	22486227	22486296	TRAJ52
-chr14	22488592	22488652	TRAJ50
-chr14	22489487	22489543	TRAJ49
-chr14	22490490	22490553	TRAJ48
-chr14	22492850	22492907	TRAJ47
-chr14	22493402	22493465	TRAJ46
-chr14	22493924	22493990	TRAJ45
-chr14	22494820	22494883	TRAJ44
-chr14	22495912	22495966	TRAJ43
-chr14	22496886	22496952	TRAJ42
-chr14	22497656	22497718	TRAJ41
-chr14	22499688	22499749	TRAJ40
-chr14	22501600	22501663	TRAJ39
-chr14	22502230	22502292	TRAJ38
-chr14	22503749	22503814	TRAJ37
-chr14	22505109	22505167	TRAJ36
-chr14	22506643	22506702	TRAJ35
-chr14	22507665	22507723	TRAJ34
-chr14	22508601	22508658	TRAJ33
-chr14	22509340	22509406	TRAJ32
-chr14	22510967	22511024	TRAJ31
-chr14	22512851	22512908	TRAJ30
-chr14	22513938	22513998	TRAJ29
-chr14	22515622	22515688	TRAJ28
-chr14	22516272	22516331	TRAJ27
-chr14	22518445	22518505	TRAJ26
-chr14	22518811	22518871	TRAJ25
-chr14	22519968	22520031	TRAJ24
-chr14	22520415	22520478	TRAJ23
-chr14	22522039	22522102	TRAJ22
-chr14	22523599	22523654	TRAJ21
-chr14	22524324	22524381	TRAJ20
-chr14	22525262	22525322	TRAJ19
-chr14	22525649	22525715	TRAJ18
-chr14	22526843	22526906	TRAJ17
-chr14	22528526	22528586	TRAJ16
-chr14	22530326	22530378	TRAJ14
-chr14	22531075	22531138	TRAJ13
-chr14	22531938	22531998	TRAJ12
-chr14	22532501	22532561	TRAJ11
-chr14	22533496	22533560	TRAJ10
-chr14	22535553	22535614	TRAJ9
-chr14	22537621	22537680	TRAJ7
-chr14	22539072	22539134	TRAJ6
-chr14	22540246	22540306	TRAJ5
-chr14	22542198	22542261	TRAJ4
-chr14	22543178	22543240	TRAJ3
-chr14	22544070	22544136	TRAJ2
-chr14	22545036	22545098	TRAJ1
-chr7	38253379	38253429	TRGJ2
-chr7	38256336	38256396	TRGJP2
-chr7	38269490	38269540	TRGJ1
-chr7	38273586	38273647	TRGJP
-chr7	38276258	38276318	TRGJP1
-chr7	38317446	38318861	TRGV9
-chr7	38330778	38330935	TRGV8
-chr7	38349781	38350022	TRGV5
-chr7	38354140	38354517	TRGV4
-chr7	38358936	38359162	TRGV3
-chr7	38363285	38363518	TRGV2
-chr7	38368012	38368169	TRGV1
-chr7	142301134	142301432	TRBV2
-chr7	142308753	142309048	TRBV3-1
-chr7	142313371	142313666	TRBV4-1
-chr7	142321250	142321544	TRBV5-1
-chr7	142328491	142328786	TRBV6-1
-chr7	142332403	142332701	TRBV7-1
-chr7	142345690	142345985	TRBV4-2
-chr7	142345691	142345691	TRBV6-2
-chr7	142345692	142345692	TRBV3-2
-chr7	142345693	142345693	TRBV4-3
-chr7	142353060	142353358	TRBV7-2
-chr7	142380966	142381261	TRBV6-4
-chr7	142384543	142384841	TRBV7-3
-chr7	142389374	142389668	TRBV5-3
-chr7	142392118	142392412	TRBV9
-chr7	142400082	142400377	TRBV10-1
-chr7	142407838	142408136	TRBV11-1
-chr7	142425170	142425465	TRBV10-2
-chr7	142434096	142434394	TRBV11-2
-chr7	142451153	142451448	TRBV6-5
-chr7	142455337	142455635	TRBV7-4
-chr7	142463287	142463581	TRBV5-4
-chr7	142469718	142470013	TRBV6-6
-chr7	142482725	142483019	TRBV5-5
-chr7	142488000	142488295	TRBV6-7
-chr7	142492375	142492673	TRBV7-6
-chr7	142500240	142500534	TRBV5-6
-chr7	142507518	142507810	TRBV6-8
-chr7	142511829	142512127	TRBV7-7
-chr7	142520262	142520556	TRBV5-7
-chr7	142520263	142520263	TRBV6-9
-chr7	142520264	142520264	TRBV7-8
-chr7	142520265	142520265	TRBV5-8
-chr7	142529464	142529762	TRBV7-9
-chr7	142535997	142536292	TRBV13
-chr7	142544390	142544685	TRBV10-3
-chr7	142555020	142555318	TRBV11-3
-chr7	142560633	142560931	TRBV12-3
-chr7	142563947	142564245	TRBV12-4
-chr7	142581129	142581427	TRBV12-5
-chr7	142588061	142588359	TRBV14
-chr7	142593178	142593473	TRBV15
-chr7	142598171	142598469	TRBV16
-chr7	142602065	142602360	TRBV17
-chr7	142616117	142616415	TRBV18
-chr7	142619237	142619532	TRBV19
-chr7	142627095	142627399	TRBV20-1
-chr7	142646169	142646467	TRBV23-1
-chr7	142656917	142657213	TRBV24-1
-chr7	142670949	142671244	TRBV25-1
-chr7	142715566	142715861	TRBV27
-chr7	142720865	142721160	TRBV28
-chr7	142740593	142740894	TRBV29-1
-chr7	142786212	142786224	TRBD1
-chr7	142786879	142786927	TRBJ1-1
-chr7	142787016	142787064	TRBJ1-2
-chr7	142787629	142787679	TRBJ1-3
-chr7	142788224	142788275	TRBJ1-4
-chr7	142788497	142788547	TRBJ1-5
-chr7	142788987	142789040	TRBJ1-6
-chr7	142796364	142796414	TRBJ2-1
-chr7	142796559	142796610	TRBJ2-2
-chr7	142796696	142796742	TRBJ2-2P
-chr7	142796846	142796895	TRBJ2-3
-chr7	142796997	142797047	TRBJ2-4
-chr7	142797118	142797166	TRBJ2-5
-chr7	142797238	142797291	TRBJ2-6
-chr7	142797455	142797502	TRBJ2-7
-chr7	142812586	142812877	TRBV30
-igh	2699	2761	IGHJ6
-igh	3314	3365	IGHJ5
-igh	3715	3763	IGHJ4
-igh	4087	4137	IGHJ3
-igh	4699	4752	IGHJ2
-igh	4907	4960	IGHJ1
-igh	5051	5063	IGHD7-27
-igh	20534	20555	IGHD1-26
-igh	21039	21058	IGHD6-25
-igh	23403	23424	IGHD5-24
-igh	24370	24389	IGHD4-23
-igh	25531	25563	IGHD3-22
-igh	28051	28080	IGHD2-21
-igh	30691	30709	IGHD1-20
-igh	31199	31221	IGHD6-19
-igh	33042	33062	IGHD5-18
-igh	34008	34025	IGHD4-17
-igh	35134	35171	IGHD3-16
-igh	37457	37489	IGHD2-15
-igh	40138	40156	IGHD1-14
-igh	40642	40664	IGHD6-13
-igh	42149	42173	IGHD5-12
-igh	43116	43133	IGHD4-11
-igh	43997	44028	IGHD3-10
-igh	44181	44213	IGHD3-9
-igh	46711	46742	IGHD2-8
-igh	49407	49424	IGHD1-7
-igh	49910	49929	IGHD6-6
-igh	51757	51778	IGHD5-5
-igh	52722	52739	IGHD4-4
-igh	53859	53890	IGHD3-3
-igh	56326	56357	IGHD2-2
-igh	59002	59020	IGHD1-1
-igh	79254	79559	IGHV6-1
-igh	126082	126378	IGHV1-2
-igh	144595	144891	IGHV1-3
-igh	151422	151718	IGHV4-4
-igh	164645	164941	IGHV7-4-1
-igh	177402	177703	IGHV2-5
-igh	201649	201945	IGHV3-7
-igh	227622	227918	IGHV3-64D
-igh	247474	247768	IGHV5-10-1
-igh	256135	256431	IGHV3-11
-igh	269040	269333	IGHV3-13
-igh	293122	293424	IGHV3-15
-igh	304703	304999	IGHV3-16
-igh	324399	324695	IGHV1-18
-igh	350436	350732	IGHV3-20
-igh	374562	374858	IGHV3-21
-igh	408103	408399	IGHV3-23
-igh	418944	419240	IGHV3-23D
-igh	426888	427184	IGHV1-24
-igh	451737	452038	IGHV2-26
-igh	474596	474892	IGHV4-28
-igh	485422	485718	IGHV3-30
-igh	499625	499924	IGHV4-30-2
-igh	509355	509651	IGHV3-30-3
-igh	523553	523852	IGHV4-30-4
-igh	534354	534650	IGHV3-30-5
-igh	548555	548854	IGHV4-31
-igh	559063	559359	IGHV3-33
-igh	572933	573226	IGHV4-34
-igh	588662	588958	IGHV3-35
-igh	609764	610056	IGHV3-38
-igh	620970	621266	IGHV4-38-2
-igh	636310	636608	IGHV3-43D
-igh	657541	657831	IGHV3-38-3
-igh	675547	675843	IGHV1-38-4
-igh	682119	682418	IGHV4-39
-igh	730673	730971	IGHV3-43
-igh	767406	767702	IGHV1-45
-igh	771525	771821	IGHV1-46
-igh	798220	798516	IGHV3-48
-igh	817346	817648	IGHV3-49
-igh	839152	839448	IGHV5-51
-igh	853086	853379	IGHV3-53
-igh	882767	883063	IGHV1-58
-igh	887659	887952	IGHV4-59
-igh	899529	899828	IGHV4-61
-igh	918133	918429	IGHV3-64
-igh	935425	935718	IGHV3-66
-igh	975092	975388	IGHV1-69
-igh	983984	984285	IGHV2-70D
-igh	997520	997816	IGHV1-69-2
-igh	1022502	1022798	IGHV1-69D
-igh	1030987	1031288	IGHV2-70
-igh	1051102	1051404	IGHV3-72
-igh	1063102	1063404	IGHV3-73
-igh	1070850	1071146	IGHV3-74
-igh	1134991	1135287	IGHV7-81
-igh	1160301	1160597	IGHV1-8
-igh	1173508	1173806	IGHV3-9
+chr14	21622284	21622567	TRAV1-1
+chr14	21643303	21643578	TRAV1-2
+chr14	21712569	21712843	TRAV2
+chr14	21724024	21724321	TRAV3
+chr14	21736694	21736982	TRAV4
+chr14	21749417	21749705	TRAV5
+chr14	21768792	21769080	TRAV6
+chr14	21783218	21783503	TRAV7
+chr14	21797591	21797886	TRAV8-1
+chr14	21811685	21811977	TRAV9-1
+chr14	21825784	21826075	TRAV10
+chr14	21841486	21841774	TRAV12-1
+chr14	21846926	21847221	TRAV8-2
+chr14	21852711	21853006	TRAV8-3
+chr14	21869077	21869365	TRAV13-1
+chr14	21888211	21888502	TRAV12-2
+chr14	21894735	21895030	TRAV8-4
+chr14	21918465	21918756	TRAV13-2
+chr14	21924350	21924651	TRAV14DV4
+chr14	21941365	21941657	TRAV9-2
+chr14	21965770	21966061	TRAV12-3
+chr14	21978825	21979120	TRAV8-6
+chr14	21990655	21990938	TRAV16
+chr14	21997883	21998168	TRAV17
+chr14	22003384	22003673	TRAV18
+chr14	22007880	22008181	TRAV19
+chr14	22040868	22041153	TRAV20
+chr14	22052766	22053056	TRAV21
+chr14	22070929	22071208	TRAV22
+chr14	22086649	22086961	TRAV23DV6
+chr14	22105558	22105846	TRAV24
+chr14	22112750	22113031	TRAV25
+chr14	22123997	22124285	TRAV26-1
+chr14	22132743	22133034	TRAV8-7
+chr14	22148351	22148633	TRAV27
+chr14	22163564	22163870	TRAV29DV5
+chr14	22168703	22168988	TRAV30
+chr14	22203081	22203368	TRAV26-2
+chr14	22207844	22208129	TRAV34
+chr14	22226966	22227254	TRAV36DV7
+chr14	22272262	22272563	TRAV38-1
+chr14	22281448	22281748	TRAV38-2DV8
+chr14	22304265	22304553	TRAV39
+chr14	22314645	22314919	TRAV40
+chr14	22320407	22320691	TRAV41
+chr14	22422743	22423042	TRDV2
+chr14	22438546	22438554	TRDD1
+chr14	22439006	22439015	TRDD2
+chr14	22449112	22449125	TRDD3
+chr14	22450088	22450139	TRDJ1
+chr14	22455248	22455296	TRDJ4
+chr14	22456688	22456742	TRDJ2
+chr14	22459097	22459156	TRDJ3
+chr14	22469041	22469344	TRDV3
+chr14	22475315	22475375	TRAJ61
+chr14	22476552	22476606	TRAJ59
+chr14	22477706	22477769	TRAJ58
+chr14	22478871	22478934	TRAJ57
+chr14	22479520	22479582	TRAJ56
+chr14	22482286	22482346	TRAJ54
+chr14	22483003	22483069	TRAJ53
+chr14	22486227	22486296	TRAJ52
+chr14	22488592	22488652	TRAJ50
+chr14	22489487	22489543	TRAJ49
+chr14	22490490	22490553	TRAJ48
+chr14	22492850	22492907	TRAJ47
+chr14	22493402	22493465	TRAJ46
+chr14	22493924	22493990	TRAJ45
+chr14	22494820	22494883	TRAJ44
+chr14	22495912	22495966	TRAJ43
+chr14	22496886	22496952	TRAJ42
+chr14	22497656	22497718	TRAJ41
+chr14	22499688	22499749	TRAJ40
+chr14	22501600	22501663	TRAJ39
+chr14	22502230	22502292	TRAJ38
+chr14	22503749	22503814	TRAJ37
+chr14	22505109	22505167	TRAJ36
+chr14	22506643	22506702	TRAJ35
+chr14	22507665	22507723	TRAJ34
+chr14	22508601	22508658	TRAJ33
+chr14	22509340	22509406	TRAJ32
+chr14	22510967	22511024	TRAJ31
+chr14	22512851	22512908	TRAJ30
+chr14	22513938	22513998	TRAJ29
+chr14	22515622	22515688	TRAJ28
+chr14	22516272	22516331	TRAJ27
+chr14	22518445	22518505	TRAJ26
+chr14	22518811	22518871	TRAJ25
+chr14	22519968	22520031	TRAJ24
+chr14	22520415	22520478	TRAJ23
+chr14	22522039	22522102	TRAJ22
+chr14	22523599	22523654	TRAJ21
+chr14	22524324	22524381	TRAJ20
+chr14	22525262	22525322	TRAJ19
+chr14	22525649	22525715	TRAJ18
+chr14	22526843	22526906	TRAJ17
+chr14	22528526	22528586	TRAJ16
+chr14	22530326	22530378	TRAJ14
+chr14	22531075	22531138	TRAJ13
+chr14	22531938	22531998	TRAJ12
+chr14	22532501	22532561	TRAJ11
+chr14	22533496	22533560	TRAJ10
+chr14	22535553	22535614	TRAJ9
+chr14	22537621	22537680	TRAJ7
+chr14	22539072	22539134	TRAJ6
+chr14	22540246	22540306	TRAJ5
+chr14	22542198	22542261	TRAJ4
+chr14	22543178	22543240	TRAJ3
+chr14	22544070	22544136	TRAJ2
+chr14	22545036	22545098	TRAJ1
+chr7	38253379	38253429	TRGJ2
+chr7	38256336	38256396	TRGJP2
+chr7	38269490	38269540	TRGJ1
+chr7	38273586	38273647	TRGJP
+chr7	38276258	38276318	TRGJP1
+chr7	38317446	38318861	TRGV9
+chr7	38330778	38330935	TRGV8
+chr7	38349781	38350022	TRGV5
+chr7	38354140	38354517	TRGV4
+chr7	38358936	38359162	TRGV3
+chr7	38363285	38363518	TRGV2
+chr7	38368012	38368169	TRGV1
+chr7	142301134	142301432	TRBV2
+chr7	142308753	142309048	TRBV3-1
+chr7	142313371	142313666	TRBV4-1
+chr7	142321250	142321544	TRBV5-1
+chr7	142328491	142328786	TRBV6-1
+chr7	142332403	142332701	TRBV7-1
+chr7	142345690	142345985	TRBV4-2
+chr7	142345691	142345691	TRBV6-2
+chr7	142345692	142345692	TRBV3-2
+chr7	142345693	142345693	TRBV4-3
+chr7	142353060	142353358	TRBV7-2
+chr7	142380966	142381261	TRBV6-4
+chr7	142384543	142384841	TRBV7-3
+chr7	142389374	142389668	TRBV5-3
+chr7	142392118	142392412	TRBV9
+chr7	142400082	142400377	TRBV10-1
+chr7	142407838	142408136	TRBV11-1
+chr7	142425170	142425465	TRBV10-2
+chr7	142434096	142434394	TRBV11-2
+chr7	142451153	142451448	TRBV6-5
+chr7	142455337	142455635	TRBV7-4
+chr7	142463287	142463581	TRBV5-4
+chr7	142469718	142470013	TRBV6-6
+chr7	142482725	142483019	TRBV5-5
+chr7	142488000	142488295	TRBV6-7
+chr7	142492375	142492673	TRBV7-6
+chr7	142500240	142500534	TRBV5-6
+chr7	142507518	142507810	TRBV6-8
+chr7	142511829	142512127	TRBV7-7
+chr7	142520262	142520556	TRBV5-7
+chr7	142520263	142520263	TRBV6-9
+chr7	142520264	142520264	TRBV7-8
+chr7	142520265	142520265	TRBV5-8
+chr7	142529464	142529762	TRBV7-9
+chr7	142535997	142536292	TRBV13
+chr7	142544390	142544685	TRBV10-3
+chr7	142555020	142555318	TRBV11-3
+chr7	142560633	142560931	TRBV12-3
+chr7	142563947	142564245	TRBV12-4
+chr7	142581129	142581427	TRBV12-5
+chr7	142588061	142588359	TRBV14
+chr7	142593178	142593473	TRBV15
+chr7	142598171	142598469	TRBV16
+chr7	142602065	142602360	TRBV17
+chr7	142616117	142616415	TRBV18
+chr7	142619237	142619532	TRBV19
+chr7	142627095	142627399	TRBV20-1
+chr7	142646169	142646467	TRBV23-1
+chr7	142656917	142657213	TRBV24-1
+chr7	142670949	142671244	TRBV25-1
+chr7	142715566	142715861	TRBV27
+chr7	142720865	142721160	TRBV28
+chr7	142740593	142740894	TRBV29-1
+chr7	142786212	142786224	TRBD1
+chr7	142786879	142786927	TRBJ1-1
+chr7	142787016	142787064	TRBJ1-2
+chr7	142787629	142787679	TRBJ1-3
+chr7	142788224	142788275	TRBJ1-4
+chr7	142788497	142788547	TRBJ1-5
+chr7	142788987	142789040	TRBJ1-6
+chr7	142796364	142796414	TRBJ2-1
+chr7	142796559	142796610	TRBJ2-2
+chr7	142796696	142796742	TRBJ2-2P
+chr7	142796846	142796895	TRBJ2-3
+chr7	142796997	142797047	TRBJ2-4
+chr7	142797118	142797166	TRBJ2-5
+chr7	142797238	142797291	TRBJ2-6
+chr7	142797455	142797502	TRBJ2-7
+chr7	142812586	142812877	TRBV30
+igh	2699	2761	IGHJ6
+igh	3314	3365	IGHJ5
+igh	3715	3763	IGHJ4
+igh	4087	4137	IGHJ3
+igh	4699	4752	IGHJ2
+igh	4907	4960	IGHJ1
+igh	5051	5063	IGHD7-27
+igh	20534	20555	IGHD1-26
+igh	21039	21058	IGHD6-25
+igh	23403	23424	IGHD5-24
+igh	24370	24389	IGHD4-23
+igh	25531	25563	IGHD3-22
+igh	28051	28080	IGHD2-21
+igh	30691	30709	IGHD1-20
+igh	31199	31221	IGHD6-19
+igh	33042	33062	IGHD5-18
+igh	34008	34025	IGHD4-17
+igh	35134	35171	IGHD3-16
+igh	37457	37489	IGHD2-15
+igh	40138	40156	IGHD1-14
+igh	40642	40664	IGHD6-13
+igh	42149	42173	IGHD5-12
+igh	43116	43133	IGHD4-11
+igh	43997	44028	IGHD3-10
+igh	44181	44213	IGHD3-9
+igh	46711	46742	IGHD2-8
+igh	49407	49424	IGHD1-7
+igh	49910	49929	IGHD6-6
+igh	51757	51778	IGHD5-5
+igh	52722	52739	IGHD4-4
+igh	53859	53890	IGHD3-3
+igh	56326	56357	IGHD2-2
+igh	59002	59020	IGHD1-1
+igh	79254	79559	IGHV6-1
+igh	126082	126378	IGHV1-2
+igh	144595	144891	IGHV1-3
+igh	151422	151718	IGHV4-4
+igh	164645	164941	IGHV7-4-1
+igh	177402	177703	IGHV2-5
+igh	201649	201945	IGHV3-7
+igh	227622	227918	IGHV3-64D
+igh	247474	247768	IGHV5-10-1
+igh	256135	256431	IGHV3-11
+igh	269040	269333	IGHV3-13
+igh	293122	293424	IGHV3-15
+igh	304703	304999	IGHV3-16
+igh	324399	324695	IGHV1-18
+igh	350436	350732	IGHV3-20
+igh	374562	374858	IGHV3-21
+igh	408103	408399	IGHV3-23
+igh	418944	419240	IGHV3-23D
+igh	426888	427184	IGHV1-24
+igh	451737	452038	IGHV2-26
+igh	474596	474892	IGHV4-28
+igh	485422	485718	IGHV3-30
+igh	499625	499924	IGHV4-30-2
+igh	509355	509651	IGHV3-30-3
+igh	523553	523852	IGHV4-30-4
+igh	534354	534650	IGHV3-30-5
+igh	548555	548854	IGHV4-31
+igh	559063	559359	IGHV3-33
+igh	572933	573226	IGHV4-34
+igh	588662	588958	IGHV3-35
+igh	609764	610056	IGHV3-38
+igh	620970	621266	IGHV4-38-2
+igh	636310	636608	IGHV3-43D
+igh	657541	657831	IGHV3-38-3
+igh	675547	675843	IGHV1-38-4
+igh	682119	682418	IGHV4-39
+igh	730673	730971	IGHV3-43
+igh	767406	767702	IGHV1-45
+igh	771525	771821	IGHV1-46
+igh	798220	798516	IGHV3-48
+igh	817346	817648	IGHV3-49
+igh	839152	839448	IGHV5-51
+igh	853086	853379	IGHV3-53
+igh	882767	883063	IGHV1-58
+igh	887659	887952	IGHV4-59
+igh	899529	899828	IGHV4-61
+igh	918133	918429	IGHV3-64
+igh	935425	935718	IGHV3-66
+igh	975092	975388	IGHV1-69
+igh	983984	984285	IGHV2-70D
+igh	997520	997816	IGHV1-69-2
+igh	1022502	1022798	IGHV1-69D
+igh	1030987	1031288	IGHV2-70
+igh	1051102	1051404	IGHV3-72
+igh	1063102	1063404	IGHV3-73
+igh	1070850	1071146	IGHV3-74
+igh	1134991	1135287	IGHV7-81
+igh	1160301	1160597	IGHV1-8
+igh	1173508	1173806	IGHV3-9
+chr2	88885850	88886153	IGKV4-1
+chr2	88897499	88897784	IGKV5-2
+chr2	89852188	89852493	IGKV2D-40
+chr2	89862694	89862981	IGKV1D-39
+chr2	89872462	89872702	IGKV2D-38
+chr2	89884929	89885216	IGKV1D-37
+chr2	89887021	89887247	IGKV2D-36
+chr2	89895501	89895772	IGKV1D-35
+chr2	89906756	89907246	IGKV3D-34
+chr2	89914260	89914545	IGKV1D-33
+chr2	89928421	89928867	IGKV1D-32
+chr2	89929700	89930202	IGKV3D-31
+chr2	89937379	89937679	IGKV2D-30
+chr2	89947969	89948269	IGKV2D-29
+chr2	89960448	89960748	IGKV2D-28
+chr2	89968866	89969335	IGKV1D-27
+chr2	89986402	89986702	IGKV2D-26
+chr2	89989986	89990221	IGKV3D-25
+chr2	90005329	90005629	IGKV2D-24
+chr2	90009401	90009927	IGKV2D-23
+chr2	90010740	90011184	IGKV1D-22
+chr2	90021900	90022185	IGKV6D-21
+chr2	90039191	90039479	IGKV3D-20
+chr2	90046795	90047057	IGKV2D-19
+chr2	90052580	90053372	IGKV2D-18
+chr2	90069953	90070238	IGKV6D-41
+chr2	90083006	90083291	IGKV1D-17
+chr2	90100453	90100738	IGKV1D-16
+chr2	90115115	90115402	IGKV3D-15
+chr2	90121785	90122564	IGKV2D-14
+chr2	90154289	90154574	IGKV1D-13
+chr2	90160050	90160335	IGKV1D-12
+chr2	90173127	90173414	IGKV3D-11
+chr2	90179888	90180587	IGKV2D-10
+chr2	90190394	90190681	IGKV1D-42
+chr2	90210244	90210529	IGKV1D-43
+chr2	90221097	90221384	IGKV1D-8
+chr2	90235080	90235370	IGKV3D-7
+chr2	88915080	88915378	IGKV7-3
+chr2	88931665	88932380	IGKV2-4
+chr2	88947300	88947585	IGKV1-5
+chr2	88966261	88966546	IGKV1-6
+chr2	88978467	88978755	IGKV3-7
+chr2	88992408	88992693	IGKV1-8
+chr2	89009981	89010266	IGKV1-9
+chr2	89019991	89020686	IGKV2-10
+chr2	89027170	89027455	IGKV3-11
+chr2	89040223	89040508	IGKV1-12
+chr2	89045994	89046466	IGKV1-13
+chr2	89078009	89078784	IGKV2-14
+chr2	89085176	89085461	IGKV3-15
+chr2	89099858	89100143	IGKV1-16
+chr2	89117341	89117626	IGKV1-17
+chr2	89128723	89129483	IGKV2-18
+chr2	89134974	89135257	IGKV2-19
+chr2	89142573	89142861	IGKV3-20
+chr2	89159750	89160035	IGKV6-21
+chr2	89170774	89171212	IGKV1-22
+chr2	89172021	89172553	IGKV2-23
+chr2	89176327	89176627	IGKV2-24
+chr2	89192499	89192752	IGKV3-25
+chr2	89196095	89196829	IGKV2-26
+chr2	89213422	89213707	IGKV1-27
+chr2	89221697	89221997	IGKV2-28
+chr2	89234173	89234912	IGKV2-29
+chr2	89244780	89245080	IGKV2-30
+chr2	89252210	89252736	IGKV3-31
+chr2	89253570	89254015	IGKV1-32
+chr2	89268000	89268285	IGKV1-33
+chr2	89275297	89275787	IGKV3-34
+chr2	89286688	89286973	IGKV1-35
+chr2	89295232	89295455	IGKV2-36
+chr2	89297263	89297548	IGKV1-37
+chr2	89309897	89310144	IGKV2-38
+chr2	89319624	89319909	IGKV1-39
+chr2	89330115	89330429	IGKV2-40
+chr2	90315365	90315836	IGKV1OR2-118
+chr22	22031173	22031472	IGLV4-69
+chr22	22214975	22215271	IGLV10-54
+chr22	22098916	22099212	IGLV8-61
+chr22	22162382	22162681	IGLV4-60
+chr22	22195980	22196276	IGLV6-57
+chr22	22201849	22202161	IGLV11-55
+chr22	22318909	22319226	IGLV5-52
+chr22	22322673	22322969	IGLV1-51
+chr22	22327517	22327816	IGLV1-50
+chr22	22343417	22343734	IGLV9-49
+chr22	22353121	22353433	IGLV5-48
+chr22	22357966	22358262	IGLV1-47
+chr22	22369793	22370087	IGLV7-46
+chr22	22376193	22376505	IGLV5-45
+chr22	22381051	22381347	IGLV1-44
+chr22	22395195	22395489	IGLV7-43
+chr22	22409983	22410282	IGLV1-40
+chr22	22427723	22428035	IGLV5-37
+chr22	22432169	22432465	IGLV1-36
+chr22	22588391	22588688	IGLV2-33
+chr22	22594766	22595056	IGLV3-32
+chr22	22668524	22668808	IGLV3-27
+chr22	22686991	22687281	IGLV3-25
+chr22	22698124	22698421	IGLV2-23
+chr22	22704534	22704818	IGLV3-22
+chr22	22712909	22713199	IGLV3-21
+chr22	22720865	22721155	IGLV3-19
+chr22	22734792	22735089	IGLV2-18
+chr22	22747631	22747921	IGLV3-16
+chr22	22758914	22759211	IGLV2-14
+chr22	22772292	22772582	IGLV3-12
+chr22	22792706	22793003	IGLV2-11
+chr22	22811991	22812281	IGLV3-10
+chr22	22819467	22819752	IGLV3-9
+chr22	22822992	22823289	IGLV2-8
+chr22	22871721	22872035	IGLV4-3
+chr22	22881107	22881392	IGLV3-1
+chr22	22922592	22922913	IGLC7
+chr22	22919533	22919855	IGLC6
+chr22	22915623	22915929	IGLC5
+chr22	22910773	22911077	IGLC4
+chr22	22906341	22906658	IGLC3
+chr22	22900976	22901292	IGLC2
+chr22	22895374	22895691	IGLC1
+chr22	22921397	22921435	IGLJ7
+chr22	22918163	22918201	IGLJ6
+chr22	22914271	22914309	IGLJ5
+chr22	22910569	22910607	IGLJ4
+chr22	22904987	22905025	IGLJ3
+chr22	22899617	22899655	IGLJ2
+chr22	22893780	22893818	IGLJ1
diff --git a/IGenotyper/data/introns.bed b/IGenotyper/data/introns.bed
index 4e26140..9c7e168 100644
--- a/IGenotyper/data/introns.bed
+++ b/IGenotyper/data/introns.bed
@@ -1,47 +1,127 @@
-igh	79571	79652	IGHV6-1
-igh	126390	126473	IGHV1-2
-igh	144903	144986	IGHV1-3
-igh	151730	151810	IGHV4-4
-igh	164953	165035	IGHV7-4-1
-igh	177715	177799	IGHV2-5
-igh	201957	202058	IGHV3-7
-igh	227930	228027	IGHV3-64D
-igh	247780	247861	IGHV5-10-1
-igh	256443	256538	IGHV3-11
-igh	269345	269446	IGHV3-13
-igh	293436	293537	IGHV3-15
-igh	305011	305110	IGHV3-16
-igh	324707	324789	IGHV1-18
-igh	350744	350845	IGHV3-20
-igh	374870	374969	IGHV3-21
-igh	419252	419353	IGHV3-23
-igh	427196	427279	IGHV1-24
-igh	452050	452134	IGHV2-26
-igh	474904	474984	IGHV4-28
-igh	485730	485829	IGHV3-30
-igh	499936	500016	IGHV4-31
-igh	559371	559470	IGHV3-33
-igh	573238	573319	IGHV4-34
-igh	588970	589069	IGHV3-35
-igh	610068	610169	IGHV3-38
-igh	682430	682511	IGHV4-39
-igh	730983	731084	IGHV3-43
-igh	767714	767797	IGHV1-45
-igh	771833	771916	IGHV1-46
-igh	798528	798629	IGHV3-48
-igh	817660	817761	IGHV3-49
-igh	839460	839541	IGHV5-51
-igh	853391	853490	IGHV3-53
-igh	883075	883158	IGHV1-58
-igh	887964	888044	IGHV4-59
-igh	899840	899920	IGHV4-61
-igh	918441	918542	IGHV3-64
-igh	935730	935829	IGHV3-66
-igh	975400	975484	IGHV1-69
-igh	984297	984381	IGHV2-70D
-igh	997828	997911	IGHV1-69-2
-igh	1022810	1022894	IGHV1-69D
-igh	1031300	1031384	IGHV2-70
-igh	1063416	1063517	IGHV3-73
-igh	1071158	1071259	IGHV3-74
-igh	1135299	1135381	IGHV7-81
+igh	79571	79652	IGHV6-1
+igh	126390	126473	IGHV1-2
+igh	144903	144986	IGHV1-3
+igh	151730	151810	IGHV4-4
+igh	164953	165035	IGHV7-4-1
+igh	177715	177799	IGHV2-5
+igh	201957	202058	IGHV3-7
+igh	227930	228027	IGHV3-64D
+igh	247780	247861	IGHV5-10-1
+igh	256443	256538	IGHV3-11
+igh	269345	269446	IGHV3-13
+igh	293436	293537	IGHV3-15
+igh	305011	305110	IGHV3-16
+igh	324707	324789	IGHV1-18
+igh	350744	350845	IGHV3-20
+igh	374870	374969	IGHV3-21
+igh	419252	419353	IGHV3-23
+igh	427196	427279	IGHV1-24
+igh	452050	452134	IGHV2-26
+igh	474904	474984	IGHV4-28
+igh	485730	485829	IGHV3-30
+igh	499936	500016	IGHV4-31
+igh	559371	559470	IGHV3-33
+igh	573238	573319	IGHV4-34
+igh	588970	589069	IGHV3-35
+igh	610068	610169	IGHV3-38
+igh	682430	682511	IGHV4-39
+igh	730983	731084	IGHV3-43
+igh	767714	767797	IGHV1-45
+igh	771833	771916	IGHV1-46
+igh	798528	798629	IGHV3-48
+igh	817660	817761	IGHV3-49
+igh	839460	839541	IGHV5-51
+igh	853391	853490	IGHV3-53
+igh	883075	883158	IGHV1-58
+igh	887964	888044	IGHV4-59
+igh	899840	899920	IGHV4-61
+igh	918441	918542	IGHV3-64
+igh	935730	935829	IGHV3-66
+igh	975400	975484	IGHV1-69
+igh	984297	984381	IGHV2-70D
+igh	997828	997911	IGHV1-69-2
+igh	1022810	1022894	IGHV1-69D
+igh	1031300	1031384	IGHV2-70
+igh	1063416	1063517	IGHV3-73
+igh	1071158	1071259	IGHV3-74
+igh	1135299	1135381	IGHV7-81
+chr22	22031042	22031162	IGLV4-69
+chr22	22214852	22214964	IGLV10-54
+chr22	22098806	22098905	IGLV8-61
+chr22	22162250	22162371	IGLV4-60
+chr22	22195844	22195969	IGLV6-57
+chr22	22201720	22201838	IGLV11-55
+chr22	22318777	22318898	IGLV5-52
+chr22	22322553	22322662	IGLV1-51
+chr22	22327396	22327506	IGLV1-50
+chr22	22343269	22343406	IGLV9-49
+chr22	22352985	22353110	IGLV5-48
+chr22	22357840	22357955	IGLV1-47
+chr22	22369693	22369782	IGLV7-46
+chr22	22376059	22376182	IGLV5-45
+chr22	22380925	22381040	IGLV1-44
+chr22	22395097	22395184	IGLV7-43
+chr22	22409862	22409972	IGLV1-40
+chr22	22427590	22427712	IGLV5-37
+chr22	22432043	22432158	IGLV1-36
+chr22	22588258	22588380	IGLV2-33
+chr22	22594609	22594755	IGLV3-32
+chr22	22668371	22668513	IGLV3-27
+chr22	22686814	22686980	IGLV3-25
+chr22	22697996	22698113	IGLV2-23
+chr22	22704374	22704523	IGLV3-22
+chr22	22711805	22712284	IGLV3-21
+chr22	22720708	22720854	IGLV3-19
+chr22	22734665	22734781	IGLV2-18
+chr22	22747466	22747620	IGLV3-16
+chr22	22758786	22758903	IGLV2-14
+chr22	22771878	22772281	IGLV3-12
+chr22	22792578	22792695	IGLV2-11
+chr22	22811827	22811980	IGLV3-10
+chr22	22819170	22819456	IGLV3-9
+chr22	22822866	22822981	IGLV2-8
+chr22	22871584	22871710	IGLV4-3
+chr22	22880803	22881096	IGLV3-1
+chr2	88885620	88885839	IGKV4-1
+chr2	88897343	88897488	IGKV5-2
+chr2	89851806	89852177	IGKV2D-40
+chr2	89862559	89862683	IGKV1D-39
+chr2	89884794	89884918	IGKV1D-37
+chr2	89914125	89914249	IGKV1D-33
+chr2	89936942	89937368	IGKV2D-30
+chr2	89947590	89947958	IGKV2D-29
+chr2	89960063	89960437	IGKV2D-28
+chr2	89986000	89986391	IGKV2D-26
+chr2	90004875	90005318	IGKV2D-24
+chr2	90021679	90021889	IGKV6D-21
+chr2	90038993	90039180	IGKV3D-20
+chr2	90069736	90069942	IGKV6D-41
+chr2	90082870	90082995	IGKV1D-17
+chr2	90100317	90100442	IGKV1D-16
+chr2	90114935	90115104	IGKV3D-15
+chr2	90154152	90154278	IGKV1D-13
+chr2	90159914	90160039	IGKV1D-12
+chr2	90172947	90173116	IGKV3D-11
+chr2	90190267	90190383	IGKV1D-42
+chr2	90210108	90210233	IGKV1D-43
+chr2	90220962	90221086	IGKV1D-8
+chr2	90234894	90235069	IGKV3D-7
+chr2	88947596	88947721	IGKV1-5
+chr2	88966557	88966683	IGKV1-6
+chr2	88978766	88978935	IGKV3-7
+chr2	88992704	88992829	IGKV1-8
+chr2	89010277	89010402	IGKV1-9
+chr2	89027466	89027635	IGKV3-11
+chr2	89040519	89040643	IGKV1-12
+chr2	89085472	89085641	IGKV3-15
+chr2	89100154	89100279	IGKV1-16
+chr2	89117637	89117762	IGKV1-17
+chr2	89142872	89143059	IGKV3-20
+chr2	89160046	89160256	IGKV6-21
+chr2	89176638	89177081	IGKV2-24
+chr2	89213718	89213842	IGKV1-27
+chr2	89222008	89222382	IGKV2-28
+chr2	89245091	89245517	IGKV2-30
+chr2	89268296	89268420	IGKV1-33
+chr2	89297559	89297683	IGKV1-37
+chr2	89319920	89320044	IGKV1-39
diff --git a/IGenotyper/data/lpart1.bed b/IGenotyper/data/lpart1.bed
index 12d3f5b..25b1f54 100644
--- a/IGenotyper/data/lpart1.bed
+++ b/IGenotyper/data/lpart1.bed
@@ -1,47 +1,127 @@
-igh	79653	79754	IGHV6-1
-igh	126474	126584	IGHV1-2
-igh	144987	145075	IGHV1-3
-igh	151811	151921	IGHV4-4
-igh	165036	165131	IGHV7-4-1
-igh	177800	177866	IGHV2-5
-igh	202059	202184	IGHV3-7
-igh	228028	228074	IGHV3-64D
-igh	247862	247965	IGHV5-10-1
-igh	256539	256705	IGHV3-11
-igh	269447	269573	IGHV3-13
-igh	293538	293664	IGHV3-15
-igh	305111	305231	IGHV3-16
-igh	324790	324895	IGHV1-18
-igh	350846	350954	IGHV3-20
-igh	374970	375095	IGHV3-21
-igh	419354	419479	IGHV3-23
-igh	427280	427386	IGHV1-24
-igh	452135	452205	IGHV2-26
-igh	474985	475103	IGHV4-28
-igh	485830	485956	IGHV3-30
-igh	500017	500135	IGHV4-31
-igh	559471	559597	IGHV3-33
-igh	573320	573418	IGHV4-34
-igh	589070	589131	IGHV3-35
-igh	610170	610294	IGHV3-38
-igh	682512	682629	IGHV4-39
-igh	731085	731211	IGHV3-43
-igh	767798	767902	IGHV1-45
-igh	771917	772267	IGHV1-46
-igh	798630	798755	IGHV3-48
-igh	817762	817888	IGHV3-49
-igh	839542	839647	IGHV5-51
-igh	853491	853758	IGHV3-53
-igh	883159	883266	IGHV1-58
-igh	888045	888236	IGHV4-59
-igh	899921	900068	IGHV4-61
-igh	918543	918669	IGHV3-64
-igh	935830	935955	IGHV3-66
-igh	975485	975592	IGHV1-69
-igh	984382	984504	IGHV2-70D
-igh	997912	997958	IGHV1-69-2
-igh	1022895	1022999	IGHV1-69D
-igh	1031385	1031431	IGHV2-70
-igh	1063518	1063644	IGHV3-73
-igh	1071260	1071542	IGHV3-74
-igh	1135382	1135482	IGHV7-81
+igh	79653	79754	IGHV6-1
+igh	126474	126584	IGHV1-2
+igh	144987	145075	IGHV1-3
+igh	151811	151921	IGHV4-4
+igh	165036	165131	IGHV7-4-1
+igh	177800	177866	IGHV2-5
+igh	202059	202184	IGHV3-7
+igh	228028	228074	IGHV3-64D
+igh	247862	247965	IGHV5-10-1
+igh	256539	256705	IGHV3-11
+igh	269447	269573	IGHV3-13
+igh	293538	293664	IGHV3-15
+igh	305111	305231	IGHV3-16
+igh	324790	324895	IGHV1-18
+igh	350846	350954	IGHV3-20
+igh	374970	375095	IGHV3-21
+igh	419354	419479	IGHV3-23
+igh	427280	427386	IGHV1-24
+igh	452135	452205	IGHV2-26
+igh	474985	475103	IGHV4-28
+igh	485830	485956	IGHV3-30
+igh	500017	500135	IGHV4-31
+igh	559471	559597	IGHV3-33
+igh	573320	573418	IGHV4-34
+igh	589070	589131	IGHV3-35
+igh	610170	610294	IGHV3-38
+igh	682512	682629	IGHV4-39
+igh	731085	731211	IGHV3-43
+igh	767798	767902	IGHV1-45
+igh	771917	772267	IGHV1-46
+igh	798630	798755	IGHV3-48
+igh	817762	817888	IGHV3-49
+igh	839542	839647	IGHV5-51
+igh	853491	853758	IGHV3-53
+igh	883159	883266	IGHV1-58
+igh	888045	888236	IGHV4-59
+igh	899921	900068	IGHV4-61
+igh	918543	918669	IGHV3-64
+igh	935830	935955	IGHV3-66
+igh	975485	975592	IGHV1-69
+igh	984382	984504	IGHV2-70D
+igh	997912	997958	IGHV1-69-2
+igh	1022895	1022999	IGHV1-69D
+igh	1031385	1031431	IGHV2-70
+igh	1063518	1063644	IGHV3-73
+igh	1071260	1071542	IGHV3-74
+igh	1135382	1135482	IGHV7-81
+chr2	88885571	88885620	IGKV4-1
+chr2	88897294	88897343	IGKV5-2
+chr2	89851790	89851806	IGKV2D-40
+chr2	89862504	89862559	IGKV1D-39
+chr2	89884739	89884794	IGKV1D-37
+chr2	89914070	89914125	IGKV1D-33
+chr2	89936893	89936942	IGKV2D-30
+chr2	89947541	89947590	IGKV2D-29
+chr2	89960014	89960063	IGKV2D-28
+chr2	89985951	89986000	IGKV2D-26
+chr2	90004826	90004875	IGKV2D-24
+chr2	90021633	90021679	IGKV6D-21
+chr2	90038944	90038993	IGKV3D-20
+chr2	90069687	90069736	IGKV6D-41
+chr2	90082815	90082870	IGKV1D-17
+chr2	90100262	90100317	IGKV1D-16
+chr2	90114886	90114935	IGKV3D-15
+chr2	90154097	90154152	IGKV1D-13
+chr2	90159859	90159914	IGKV1D-12
+chr2	90172898	90172947	IGKV3D-11
+chr2	90190212	90190267	IGKV1D-42
+chr2	90210053	90210108	IGKV1D-43
+chr2	90220907	90220962	IGKV1D-8
+chr2	90234836	90234894	IGKV3D-7
+chr2	88947721	88947776	IGKV1-5
+chr2	88966683	88966738	IGKV1-6
+chr2	88978935	88978984	IGKV3-7
+chr2	88992829	88992878	IGKV1-8
+chr2	89010402	89010457	IGKV1-9
+chr2	89027635	89027684	IGKV3-11
+chr2	89040643	89040698	IGKV1-12
+chr2	89085641	89085690	IGKV3-15
+chr2	89100279	89100334	IGKV1-16
+chr2	89117762	89117817	IGKV1-17
+chr2	89143059	89143108	IGKV3-20
+chr2	89160256	89160302	IGKV6-21
+chr2	89177081	89177130	IGKV2-24
+chr2	89213842	89213897	IGKV1-27
+chr2	89222382	89222431	IGKV2-28
+chr2	89245517	89245566	IGKV2-30
+chr2	89268420	89268475	IGKV1-33
+chr2	89297683	89297738	IGKV1-37
+chr2	89320044	89320099	IGKV1-39
+chr22	22030993	22031042	IGLV4-69
+chr22	22214806	22214852	IGLV10-54
+chr22	22098745	22098806	IGLV8-61
+chr22	22162198	22162250	IGLV4-60
+chr22	22195798	22195844	IGLV6-57
+chr22	22201674	22201720	IGLV11-55
+chr22	22318731	22318777	IGLV5-52
+chr22	22322507	22322553	IGLV1-51
+chr22	22327350	22327396	IGLV1-50
+chr22	22343223	22343269	IGLV9-49
+chr22	22352939	22352985	IGLV5-48
+chr22	22357794	22357840	IGLV1-47
+chr22	22369647	22369693	IGLV7-46
+chr22	22376013	22376059	IGLV5-45
+chr22	22380879	22380925	IGLV1-44
+chr22	22395051	22395097	IGLV7-43
+chr22	22409816	22409862	IGLV1-40
+chr22	22427544	22427590	IGLV5-37
+chr22	22431997	22432043	IGLV1-36
+chr22	22588212	22588258	IGLV2-33
+chr22	22594566	22594609	IGLV3-32
+chr22	22668325	22668371	IGLV3-27
+chr22	22686768	22686814	IGLV3-25
+chr22	22697950	22697996	IGLV2-23
+chr22	22704328	22704374	IGLV3-22
+chr22	22712418	22712464	IGLV3-21
+chr22	22720662	22720708	IGLV3-19
+chr22	22734619	22734665	IGLV2-18
+chr22	22747420	22747466	IGLV3-16
+chr22	22758740	22758786	IGLV2-14
+chr22	22771832	22771878	IGLV3-12
+chr22	22792532	22792578	IGLV2-11
+chr22	22811781	22811827	IGLV3-10
+chr22	22819124	22819170	IGLV3-9
+chr22	22822820	22822866	IGLV2-8
+chr22	22871538	22871584	IGLV4-3
+chr22	22880757	22880803	IGLV3-1
diff --git a/IGenotyper/data/lpart2.bed b/IGenotyper/data/lpart2.bed
new file mode 100644
index 0000000..97f3b3b
--- /dev/null
+++ b/IGenotyper/data/lpart2.bed
@@ -0,0 +1,80 @@
+chr2	88885839	88885850	IGKV4-1
+chr2	88897488	88897499	IGKV5-2
+chr2	89852177	89852188	IGKV2D-40
+chr2	89862683	89862694	IGKV1D-39
+chr2	89884918	89884929	IGKV1D-37
+chr2	89914249	89914260	IGKV1D-33
+chr2	89937368	89937379	IGKV2D-30
+chr2	89947958	89947969	IGKV2D-29
+chr2	89960437	89960448	IGKV2D-28
+chr2	89986391	89986402	IGKV2D-26
+chr2	90005318	90005329	IGKV2D-24
+chr2	90021889	90021900	IGKV6D-21
+chr2	90039180	90039191	IGKV3D-20
+chr2	90069942	90069953	IGKV6D-41
+chr2	90082995	90083006	IGKV1D-17
+chr2	90100442	90100453	IGKV1D-16
+chr2	90115104	90115115	IGKV3D-15
+chr2	90154278	90154289	IGKV1D-13
+chr2	90160039	90160050	IGKV1D-12
+chr2	90173116	90173127	IGKV3D-11
+chr2	90190383	90190394	IGKV1D-42
+chr2	90210233	90210244	IGKV1D-43
+chr2	90221086	90221097	IGKV1D-8
+chr2	90235069	90235080	IGKV3D-7
+chr2	88947585	88947596	IGKV1-5
+chr2	88966546	88966557	IGKV1-6
+chr2	88978755	88978766	IGKV3-7
+chr2	88992693	88992704	IGKV1-8
+chr2	89010266	89010277	IGKV1-9
+chr2	89027455	89027466	IGKV3-11
+chr2	89040508	89040519	IGKV1-12
+chr2	89085461	89085472	IGKV3-15
+chr2	89100143	89100154	IGKV1-16
+chr2	89117626	89117637	IGKV1-17
+chr2	89142861	89142872	IGKV3-20
+chr2	89160035	89160046	IGKV6-21
+chr2	89176627	89176638	IGKV2-24
+chr2	89213707	89213718	IGKV1-27
+chr2	89221997	89222008	IGKV2-28
+chr2	89245080	89245091	IGKV2-30
+chr2	89268285	89268296	IGKV1-33
+chr2	89297548	89297559	IGKV1-37
+chr2	89319909	89319920	IGKV1-39
+chr22	22031162	22031173	IGLV4-69
+chr22	22214964	22214975	IGLV10-54
+chr22	22098905	22098916	IGLV8-61
+chr22	22162371	22162382	IGLV4-60
+chr22	22195969	22195980	IGLV6-57
+chr22	22201838	22201849	IGLV11-55
+chr22	22318898	22318909	IGLV5-52
+chr22	22322662	22322673	IGLV1-51
+chr22	22327506	22327517	IGLV1-50
+chr22	22343406	22343417	IGLV9-49
+chr22	22353110	22353121	IGLV5-48
+chr22	22357955	22357966	IGLV1-47
+chr22	22369782	22369793	IGLV7-46
+chr22	22376182	22376193	IGLV5-45
+chr22	22381040	22381051	IGLV1-44
+chr22	22395184	22395195	IGLV7-43
+chr22	22409972	22409983	IGLV1-40
+chr22	22427712	22427723	IGLV5-37
+chr22	22432158	22432169	IGLV1-36
+chr22	22588380	22588391	IGLV2-33
+chr22	22594755	22594766	IGLV3-32
+chr22	22668513	22668524	IGLV3-27
+chr22	22686980	22686991	IGLV3-25
+chr22	22698113	22698124	IGLV2-23
+chr22	22704523	22704534	IGLV3-22
+chr22	22712898	22712909	IGLV3-21
+chr22	22720854	22720865	IGLV3-19
+chr22	22734781	22734792	IGLV2-18
+chr22	22747620	22747631	IGLV3-16
+chr22	22758903	22758914	IGLV2-14
+chr22	22772281	22772292	IGLV3-12
+chr22	22792695	22792706	IGLV2-11
+chr22	22811980	22811991	IGLV3-10
+chr22	22819456	22819467	IGLV3-9
+chr22	22822981	22822992	IGLV2-8
+chr22	22871710	22871721	IGLV4-3
+chr22	22881096	22881107	IGLV3-1
diff --git a/IGenotyper/data/rss.bed b/IGenotyper/data/rss.bed
index 2011274..22f5bd6 100644
--- a/IGenotyper/data/rss.bed
+++ b/IGenotyper/data/rss.bed
@@ -1,48 +1,178 @@
-igh	79215	79253	IGHV6-1
-igh	126041	126079	IGHV1-2
-igh	144554	144592	IGHV1-3
-igh	151381	151419	IGHV4-4
-igh	164604	164642	IGHV7-4-1
-igh	177361	177399	IGHV2-5
-igh	201610	201648	IGHV3-7
-igh	227581	227619	IGHV3-64D
-igh	247431	247469	IGHV5-10-1
-igh	256094	256132	IGHV3-11
-igh	268999	269037	IGHV3-13
-igh	293083	293121	IGHV3-15
-igh	304664	304702	IGHV3-16
-igh	324360	324398	IGHV1-18
-igh	350395	350433	IGHV3-20
-igh	374523	374561	IGHV3-21
-igh	418903	418941	IGHV3-23
-igh	426849	426887	IGHV1-24
-igh	451697	451735	IGHV2-26
-igh	474555	474593	IGHV4-28
-igh	485383	485421	IGHV3-30
-igh	499584	499622	IGHV4-31
-igh	559024	559062	IGHV3-33
-igh	572894	572932	IGHV4-34
-igh	588623	588661	IGHV3-35
-igh	609724	609762	IGHV3-38
-igh	682080	682118	IGHV4-39
-igh	730633	730671	IGHV3-43
-igh	767365	767403	IGHV1-45
-igh	771486	771524	IGHV1-46
-igh	798179	798217	IGHV3-48
-igh	817305	817343	IGHV3-49
-igh	839113	839151	IGHV5-51
-igh	853045	853083	IGHV3-53
-igh	882726	882764	IGHV1-58
-igh	887618	887656	IGHV4-59
-igh	899488	899526	IGHV4-61
-igh	918094	918132	IGHV3-64
-igh	935386	935424	IGHV3-66
-igh	975053	975091	IGHV1-69
-igh	983943	983981	IGHV2-70D
-igh	997479	997517	IGHV1-69-2
-igh	1022461	1022499	IGHV1-69D
-igh	1030946	1030984	IGHV2-70
-igh	1051060	1051098	IGHV3-72
-igh	1063063	1063101	IGHV3-73
-igh	1070811	1070849	IGHV3-74
-igh	1134952	1134990	IGHV7-81
+igh	79215	79253	IGHV6-1
+igh	126041	126079	IGHV1-2
+igh	144554	144592	IGHV1-3
+igh	151381	151419	IGHV4-4
+igh	164604	164642	IGHV7-4-1
+igh	177361	177399	IGHV2-5
+igh	201610	201648	IGHV3-7
+igh	227581	227619	IGHV3-64D
+igh	247431	247469	IGHV5-10-1
+igh	256094	256132	IGHV3-11
+igh	268999	269037	IGHV3-13
+igh	293083	293121	IGHV3-15
+igh	304664	304702	IGHV3-16
+igh	324360	324398	IGHV1-18
+igh	350395	350433	IGHV3-20
+igh	374523	374561	IGHV3-21
+igh	418903	418941	IGHV3-23
+igh	426849	426887	IGHV1-24
+igh	451697	451735	IGHV2-26
+igh	474555	474593	IGHV4-28
+igh	485383	485421	IGHV3-30
+igh	499584	499622	IGHV4-31
+igh	559024	559062	IGHV3-33
+igh	572894	572932	IGHV4-34
+igh	588623	588661	IGHV3-35
+igh	609724	609762	IGHV3-38
+igh	682080	682118	IGHV4-39
+igh	730633	730671	IGHV3-43
+igh	767365	767403	IGHV1-45
+igh	771486	771524	IGHV1-46
+igh	798179	798217	IGHV3-48
+igh	817305	817343	IGHV3-49
+igh	839113	839151	IGHV5-51
+igh	853045	853083	IGHV3-53
+igh	882726	882764	IGHV1-58
+igh	887618	887656	IGHV4-59
+igh	899488	899526	IGHV4-61
+igh	918094	918132	IGHV3-64
+igh	935386	935424	IGHV3-66
+igh	975053	975091	IGHV1-69
+igh	983943	983981	IGHV2-70D
+igh	997479	997517	IGHV1-69-2
+igh	1022461	1022499	IGHV1-69D
+igh	1030946	1030984	IGHV2-70
+igh	1051060	1051098	IGHV3-72
+igh	1063063	1063101	IGHV3-73
+igh	1070811	1070849	IGHV3-74
+igh	1134952	1134990	IGHV7-81
+chr22	22881392	22881431	IGLV3-1
+chr22	22872035	22872074	IGLV4-3
+chr22	22823289	22823328	IGLV2-8
+chr22	22819752	22819791	IGLV3-9
+chr22	22812281	22812320	IGLV3-10
+chr22	22793003	22793042	IGLV2-11
+chr22	22772582	22772621	IGLV3-12
+chr22	22759211	22759250	IGLV2-14
+chr22	22747921	22747960	IGLV3-16
+chr22	22735089	22735128	IGLV2-18
+chr22	22721155	22721194	IGLV3-19
+chr22	22713199	22713238	IGLV3-21
+chr22	22704818	22704857	IGLV3-22
+chr22	22698421	22698460	IGLV2-23
+chr22	22687281	22687320	IGLV3-25
+chr22	22668808	22668847	IGLV3-27
+chr22	22595056	22595095	IGLV3-32
+chr22	22588688	22588727	IGLV2-33
+chr22	22432465	22432504	IGLV1-36
+chr22	22428035	22428074	IGLV5-37
+chr22	22410282	22410321	IGLV1-40
+chr22	22395489	22395528	IGLV7-43
+chr22	22381347	22381386	IGLV1-44
+chr22	22376505	22376544	IGLV5-45
+chr22	22370087	22370126	IGLV7-46
+chr22	22358262	22358301	IGLV1-47
+chr22	22353433	22353472	IGLV5-48
+chr22	22343734	22343773	IGLV9-49
+chr22	22327816	22327855	IGLV1-50
+chr22	22322969	22323008	IGLV1-51
+chr22	22319226	22319265	IGLV5-52
+chr22	22215271	22215310	IGLV10-54
+chr22	22202161	22202200	IGLV11-55
+chr22	22196276	22196315	IGLV6-57
+chr22	22162681	22162720	IGLV4-60
+chr22	22099212	22099251	IGLV8-61
+chr22	22031472	22031511	IGLV4-69
+chr22	22921368	22921397	IGLJ7
+chr22	22918134	22918163	IGLJ6
+chr22	22914242	22914271	IGLJ5
+chr22	22910540	22910569	IGLJ4
+chr22	22904958	22904987	IGLJ3
+chr22	22899588	22899617	IGLJ2
+chr22	22893751	22893780	IGLJ1
+chr2	88886153	88886181	IGKV4-1
+chr2	88886153	88886192	IGKV4-1
+chr2	88897784	88897812	IGKV5-2
+chr2	88897784	88897823	IGKV5-2
+chr2	89852493	89852521	IGKV2D-40
+chr2	89852493	89852532	IGKV2D-40
+chr2	89862981	89863009	IGKV1D-39
+chr2	89862981	89863020	IGKV1D-39
+chr2	89885216	89885244	IGKV1D-37
+chr2	89885216	89885255	IGKV1D-37
+chr2	89914545	89914573	IGKV1D-33
+chr2	89914545	89914584	IGKV1D-33
+chr2	89937679	89937707	IGKV2D-30
+chr2	89937679	89937718	IGKV2D-30
+chr2	89948269	89948297	IGKV2D-29
+chr2	89948269	89948308	IGKV2D-29
+chr2	89960748	89960776	IGKV2D-28
+chr2	89960748	89960787	IGKV2D-28
+chr2	89986702	89986730	IGKV2D-26
+chr2	89986702	89986741	IGKV2D-26
+chr2	90005629	90005657	IGKV2D-24
+chr2	90005629	90005668	IGKV2D-24
+chr2	90022185	90022213	IGKV6D-21
+chr2	90022185	90022224	IGKV6D-21
+chr2	90039479	90039507	IGKV3D-20
+chr2	90039479	90039518	IGKV3D-20
+chr2	90070238	90070266	IGKV6D-41
+chr2	90070238	90070277	IGKV6D-41
+chr2	90083291	90083319	IGKV1D-17
+chr2	90083291	90083330	IGKV1D-17
+chr2	90100738	90100766	IGKV1D-16
+chr2	90100738	90100777	IGKV1D-16
+chr2	90115402	90115430	IGKV3D-15
+chr2	90115402	90115441	IGKV3D-15
+chr2	90154574	90154602	IGKV1D-13
+chr2	90154574	90154613	IGKV1D-13
+chr2	90160335	90160363	IGKV1D-12
+chr2	90160335	90160374	IGKV1D-12
+chr2	90173414	90173442	IGKV3D-11
+chr2	90173414	90173453	IGKV3D-11
+chr2	90190681	90190709	IGKV1D-42
+chr2	90190681	90190720	IGKV1D-42
+chr2	90210529	90210557	IGKV1D-43
+chr2	90210529	90210568	IGKV1D-43
+chr2	90221384	90221412	IGKV1D-8
+chr2	90221384	90221423	IGKV1D-8
+chr2	90235370	90235398	IGKV3D-7
+chr2	90235370	90235409	IGKV3D-7
+chr2	88947300	88947328	IGKV1-5
+chr2	88947300	88947339	IGKV1-5
+chr2	88966261	88966289	IGKV1-6
+chr2	88966261	88966300	IGKV1-6
+chr2	88978467	88978495	IGKV3-7
+chr2	88978467	88978506	IGKV3-7
+chr2	88992408	88992436	IGKV1-8
+chr2	88992408	88992447	IGKV1-8
+chr2	89009981	89010009	IGKV1-9
+chr2	89009981	89010020	IGKV1-9
+chr2	89027170	89027198	IGKV3-11
+chr2	89027170	89027209	IGKV3-11
+chr2	89040223	89040251	IGKV1-12
+chr2	89040223	89040262	IGKV1-12
+chr2	89085176	89085204	IGKV3-15
+chr2	89085176	89085215	IGKV3-15
+chr2	89099858	89099886	IGKV1-16
+chr2	89099858	89099897	IGKV1-16
+chr2	89117341	89117369	IGKV1-17
+chr2	89117341	89117380	IGKV1-17
+chr2	89142573	89142601	IGKV3-20
+chr2	89142573	89142612	IGKV3-20
+chr2	89159750	89159778	IGKV6-21
+chr2	89159750	89159789	IGKV6-21
+chr2	89176327	89176355	IGKV2-24
+chr2	89176327	89176366	IGKV2-24
+chr2	89213422	89213450	IGKV1-27
+chr2	89213422	89213461	IGKV1-27
+chr2	89221697	89221725	IGKV2-28
+chr2	89221697	89221736	IGKV2-28
+chr2	89244780	89244808	IGKV2-30
+chr2	89244780	89244819	IGKV2-30
+chr2	89268000	89268028	IGKV1-33
+chr2	89268000	89268039	IGKV1-33
+chr2	89297263	89297291	IGKV1-37
+chr2	89297263	89297302	IGKV1-37
+chr2	89319624	89319652	IGKV1-39
+chr2	89319624	89319663	IGKV1-39
diff --git a/IGenotyper/data/rss_components.bed b/IGenotyper/data/rss_components.bed
new file mode 100644
index 0000000..ccb20a8
--- /dev/null
+++ b/IGenotyper/data/rss_components.bed
@@ -0,0 +1,390 @@
+chr22	22881392	22881399	IGLV3-1
+chr22	22872035	22872042	IGLV4-3
+chr22	22823289	22823296	IGLV2-8
+chr22	22819752	22819759	IGLV3-9
+chr22	22812281	22812288	IGLV3-10
+chr22	22793003	22793010	IGLV2-11
+chr22	22772582	22772589	IGLV3-12
+chr22	22759211	22759218	IGLV2-14
+chr22	22747921	22747928	IGLV3-16
+chr22	22735089	22735096	IGLV2-18
+chr22	22721155	22721162	IGLV3-19
+chr22	22713199	22713206	IGLV3-21
+chr22	22704818	22704825	IGLV3-22
+chr22	22698421	22698428	IGLV2-23
+chr22	22687281	22687288	IGLV3-25
+chr22	22668808	22668815	IGLV3-27
+chr22	22595056	22595063	IGLV3-32
+chr22	22588688	22588695	IGLV2-33
+chr22	22432465	22432472	IGLV1-36
+chr22	22428035	22428042	IGLV5-37
+chr22	22410282	22410289	IGLV1-40
+chr22	22395489	22395496	IGLV7-43
+chr22	22381347	22381354	IGLV1-44
+chr22	22376505	22376512	IGLV5-45
+chr22	22370087	22370094	IGLV7-46
+chr22	22358262	22358269	IGLV1-47
+chr22	22353433	22353440	IGLV5-48
+chr22	22343734	22343741	IGLV9-49
+chr22	22327816	22327823	IGLV1-50
+chr22	22322969	22322976	IGLV1-51
+chr22	22319226	22319233	IGLV5-52
+chr22	22215271	22215278	IGLV10-54
+chr22	22202161	22202168	IGLV11-55
+chr22	22196276	22196283	IGLV6-57
+chr22	22162681	22162688	IGLV4-60
+chr22	22099212	22099219	IGLV8-61
+chr22	22031472	22031479	IGLV4-69
+chr22	22921368	22921375	IGLJ7
+chr22	22918134	22918141	IGLJ6
+chr22	22914242	22914249	IGLJ5
+chr22	22910540	22910547	IGLJ4
+chr22	22904958	22904965	IGLJ3
+chr22	22899588	22899595	IGLJ2
+chr22	22893751	22893758	IGLJ1
+chr22	22881399	22881422	IGLV3-1
+chr22	22872042	22872065	IGLV4-3
+chr22	22823296	22823319	IGLV2-8
+chr22	22819759	22819782	IGLV3-9
+chr22	22812288	22812311	IGLV3-10
+chr22	22793010	22793033	IGLV2-11
+chr22	22772589	22772612	IGLV3-12
+chr22	22759218	22759241	IGLV2-14
+chr22	22747928	22747951	IGLV3-16
+chr22	22735096	22735119	IGLV2-18
+chr22	22721162	22721185	IGLV3-19
+chr22	22713206	22713229	IGLV3-21
+chr22	22704825	22704848	IGLV3-22
+chr22	22698428	22698451	IGLV2-23
+chr22	22687288	22687311	IGLV3-25
+chr22	22668815	22668838	IGLV3-27
+chr22	22595063	22595086	IGLV3-32
+chr22	22588695	22588718	IGLV2-33
+chr22	22432472	22432495	IGLV1-36
+chr22	22428042	22428065	IGLV5-37
+chr22	22410289	22410312	IGLV1-40
+chr22	22395496	22395519	IGLV7-43
+chr22	22381354	22381377	IGLV1-44
+chr22	22376512	22376535	IGLV5-45
+chr22	22370094	22370117	IGLV7-46
+chr22	22358269	22358292	IGLV1-47
+chr22	22353440	22353463	IGLV5-48
+chr22	22343741	22343764	IGLV9-49
+chr22	22327823	22327846	IGLV1-50
+chr22	22322976	22322999	IGLV1-51
+chr22	22319233	22319256	IGLV5-52
+chr22	22215278	22215301	IGLV10-54
+chr22	22202168	22202191	IGLV11-55
+chr22	22196283	22196306	IGLV6-57
+chr22	22162688	22162711	IGLV4-60
+chr22	22099219	22099242	IGLV8-61
+chr22	22031479	22031502	IGLV4-69
+chr22	22921375	22921388	IGLJ7
+chr22	22918141	22918154	IGLJ6
+chr22	22914249	22914262	IGLJ5
+chr22	22910547	22910560	IGLJ4
+chr22	22904965	22904978	IGLJ3
+chr22	22899595	22899608	IGLJ2
+chr22	22893758	22893771	IGLJ1
+chr22	22881422	22881431	IGLV3-1
+chr22	22872065	22872074	IGLV4-3
+chr22	22823319	22823328	IGLV2-8
+chr22	22819782	22819791	IGLV3-9
+chr22	22812311	22812320	IGLV3-10
+chr22	22793033	22793042	IGLV2-11
+chr22	22772612	22772621	IGLV3-12
+chr22	22759241	22759250	IGLV2-14
+chr22	22747951	22747960	IGLV3-16
+chr22	22735119	22735128	IGLV2-18
+chr22	22721185	22721194	IGLV3-19
+chr22	22713229	22713238	IGLV3-21
+chr22	22704848	22704857	IGLV3-22
+chr22	22698451	22698460	IGLV2-23
+chr22	22687311	22687320	IGLV3-25
+chr22	22668838	22668847	IGLV3-27
+chr22	22595086	22595095	IGLV3-32
+chr22	22588718	22588727	IGLV2-33
+chr22	22432495	22432504	IGLV1-36
+chr22	22428065	22428074	IGLV5-37
+chr22	22410312	22410321	IGLV1-40
+chr22	22395519	22395528	IGLV7-43
+chr22	22381377	22381386	IGLV1-44
+chr22	22376535	22376544	IGLV5-45
+chr22	22370117	22370126	IGLV7-46
+chr22	22358292	22358301	IGLV1-47
+chr22	22353463	22353472	IGLV5-48
+chr22	22343764	22343773	IGLV9-49
+chr22	22327846	22327855	IGLV1-50
+chr22	22322999	22323008	IGLV1-51
+chr22	22319256	22319265	IGLV5-52
+chr22	22215301	22215310	IGLV10-54
+chr22	22202191	22202200	IGLV11-55
+chr22	22196306	22196315	IGLV6-57
+chr22	22162711	22162720	IGLV4-60
+chr22	22099242	22099251	IGLV8-61
+chr22	22031502	22031511	IGLV4-69
+chr22	22921388	22921397	IGLJ7
+chr22	22918154	22918163	IGLJ6
+chr22	22914262	22914271	IGLJ5
+chr22	22910560	22910569	IGLJ4
+chr22	22904978	22904987	IGLJ3
+chr22	22899608	22899617	IGLJ2
+chr22	22893771	22893780	IGLJ1
+chr2	88886153	88886160	IGKV4-1
+chr2	88886153	88886160	IGKV4-1
+chr2	88897784	88897791	IGKV5-2
+chr2	88897784	88897791	IGKV5-2
+chr2	89852493	89852500	IGKV2D-40
+chr2	89852493	89852500	IGKV2D-40
+chr2	89862981	89862988	IGKV1D-39
+chr2	89862981	89862988	IGKV1D-39
+chr2	89885216	89885223	IGKV1D-37
+chr2	89885216	89885223	IGKV1D-37
+chr2	89914545	89914552	IGKV1D-33
+chr2	89914545	89914552	IGKV1D-33
+chr2	89937679	89937686	IGKV2D-30
+chr2	89937679	89937686	IGKV2D-30
+chr2	89948269	89948276	IGKV2D-29
+chr2	89948269	89948276	IGKV2D-29
+chr2	89960748	89960755	IGKV2D-28
+chr2	89960748	89960755	IGKV2D-28
+chr2	89986702	89986709	IGKV2D-26
+chr2	89986702	89986709	IGKV2D-26
+chr2	90005629	90005636	IGKV2D-24
+chr2	90005629	90005636	IGKV2D-24
+chr2	90022185	90022192	IGKV6D-21
+chr2	90022185	90022192	IGKV6D-21
+chr2	90039479	90039486	IGKV3D-20
+chr2	90039479	90039486	IGKV3D-20
+chr2	90070238	90070245	IGKV6D-41
+chr2	90070238	90070245	IGKV6D-41
+chr2	90083291	90083298	IGKV1D-17
+chr2	90083291	90083298	IGKV1D-17
+chr2	90100738	90100745	IGKV1D-16
+chr2	90100738	90100745	IGKV1D-16
+chr2	90115402	90115409	IGKV3D-15
+chr2	90115402	90115409	IGKV3D-15
+chr2	90154574	90154581	IGKV1D-13
+chr2	90154574	90154581	IGKV1D-13
+chr2	90160335	90160342	IGKV1D-12
+chr2	90160335	90160342	IGKV1D-12
+chr2	90173414	90173421	IGKV3D-11
+chr2	90173414	90173421	IGKV3D-11
+chr2	90190681	90190688	IGKV1D-42
+chr2	90190681	90190688	IGKV1D-42
+chr2	90210529	90210536	IGKV1D-43
+chr2	90210529	90210536	IGKV1D-43
+chr2	90221384	90221391	IGKV1D-8
+chr2	90221384	90221391	IGKV1D-8
+chr2	90235370	90235377	IGKV3D-7
+chr2	90235370	90235377	IGKV3D-7
+chr2	88947321	88947328	IGKV1-5
+chr2	88947332	88947339	IGKV1-5
+chr2	88966282	88966289	IGKV1-6
+chr2	88966293	88966300	IGKV1-6
+chr2	88978488	88978495	IGKV3-7
+chr2	88978499	88978506	IGKV3-7
+chr2	88992429	88992436	IGKV1-8
+chr2	88992440	88992447	IGKV1-8
+chr2	89010002	89010009	IGKV1-9
+chr2	89010013	89010020	IGKV1-9
+chr2	89027191	89027198	IGKV3-11
+chr2	89027202	89027209	IGKV3-11
+chr2	89040244	89040251	IGKV1-12
+chr2	89040255	89040262	IGKV1-12
+chr2	89085197	89085204	IGKV3-15
+chr2	89085208	89085215	IGKV3-15
+chr2	89099879	89099886	IGKV1-16
+chr2	89099890	89099897	IGKV1-16
+chr2	89117362	89117369	IGKV1-17
+chr2	89117373	89117380	IGKV1-17
+chr2	89142594	89142601	IGKV3-20
+chr2	89142605	89142612	IGKV3-20
+chr2	89159771	89159778	IGKV6-21
+chr2	89159782	89159789	IGKV6-21
+chr2	89176348	89176355	IGKV2-24
+chr2	89176359	89176366	IGKV2-24
+chr2	89213443	89213450	IGKV1-27
+chr2	89213454	89213461	IGKV1-27
+chr2	89221718	89221725	IGKV2-28
+chr2	89221729	89221736	IGKV2-28
+chr2	89244801	89244808	IGKV2-30
+chr2	89244812	89244819	IGKV2-30
+chr2	89268021	89268028	IGKV1-33
+chr2	89268032	89268039	IGKV1-33
+chr2	89297284	89297291	IGKV1-37
+chr2	89297295	89297302	IGKV1-37
+chr2	89319645	89319652	IGKV1-39
+chr2	89319656	89319663	IGKV1-39
+chr2	88886172	88886181	IGKV4-1
+chr2	88886183	88886192	IGKV4-1
+chr2	88897803	88897812	IGKV5-2
+chr2	88897814	88897823	IGKV5-2
+chr2	89852512	89852521	IGKV2D-40
+chr2	89852523	89852532	IGKV2D-40
+chr2	89863000	89863009	IGKV1D-39
+chr2	89863011	89863020	IGKV1D-39
+chr2	89885235	89885244	IGKV1D-37
+chr2	89885246	89885255	IGKV1D-37
+chr2	89914564	89914573	IGKV1D-33
+chr2	89914575	89914584	IGKV1D-33
+chr2	89937698	89937707	IGKV2D-30
+chr2	89937709	89937718	IGKV2D-30
+chr2	89948288	89948297	IGKV2D-29
+chr2	89948299	89948308	IGKV2D-29
+chr2	89960767	89960776	IGKV2D-28
+chr2	89960778	89960787	IGKV2D-28
+chr2	89986721	89986730	IGKV2D-26
+chr2	89986732	89986741	IGKV2D-26
+chr2	90005648	90005657	IGKV2D-24
+chr2	90005659	90005668	IGKV2D-24
+chr2	90022204	90022213	IGKV6D-21
+chr2	90022215	90022224	IGKV6D-21
+chr2	90039498	90039507	IGKV3D-20
+chr2	90039509	90039518	IGKV3D-20
+chr2	90070257	90070266	IGKV6D-41
+chr2	90070268	90070277	IGKV6D-41
+chr2	90083310	90083319	IGKV1D-17
+chr2	90083321	90083330	IGKV1D-17
+chr2	90100757	90100766	IGKV1D-16
+chr2	90100768	90100777	IGKV1D-16
+chr2	90115421	90115430	IGKV3D-15
+chr2	90115432	90115441	IGKV3D-15
+chr2	90154593	90154602	IGKV1D-13
+chr2	90154604	90154613	IGKV1D-13
+chr2	90160354	90160363	IGKV1D-12
+chr2	90160365	90160374	IGKV1D-12
+chr2	90173433	90173442	IGKV3D-11
+chr2	90173444	90173453	IGKV3D-11
+chr2	90190700	90190709	IGKV1D-42
+chr2	90190711	90190720	IGKV1D-42
+chr2	90210548	90210557	IGKV1D-43
+chr2	90210559	90210568	IGKV1D-43
+chr2	90221403	90221412	IGKV1D-8
+chr2	90221414	90221423	IGKV1D-8
+chr2	90235389	90235398	IGKV3D-7
+chr2	90235400	90235409	IGKV3D-7
+chr2	88947300	88947309	IGKV1-5
+chr2	88947300	88947309	IGKV1-5
+chr2	88966261	88966270	IGKV1-6
+chr2	88966261	88966270	IGKV1-6
+chr2	88978467	88978476	IGKV3-7
+chr2	88978467	88978476	IGKV3-7
+chr2	88992408	88992417	IGKV1-8
+chr2	88992408	88992417	IGKV1-8
+chr2	89009981	89009990	IGKV1-9
+chr2	89009981	89009990	IGKV1-9
+chr2	89027170	89027179	IGKV3-11
+chr2	89027170	89027179	IGKV3-11
+chr2	89040223	89040232	IGKV1-12
+chr2	89040223	89040232	IGKV1-12
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+chr2	89085176	89085185	IGKV3-15
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+chr2	89099858	89099867	IGKV1-16
+chr2	89117341	89117350	IGKV1-17
+chr2	89117341	89117350	IGKV1-17
+chr2	89142573	89142582	IGKV3-20
+chr2	89142573	89142582	IGKV3-20
+chr2	89159750	89159759	IGKV6-21
+chr2	89159750	89159759	IGKV6-21
+chr2	89176327	89176336	IGKV2-24
+chr2	89176327	89176336	IGKV2-24
+chr2	89213422	89213431	IGKV1-27
+chr2	89213422	89213431	IGKV1-27
+chr2	89221697	89221706	IGKV2-28
+chr2	89221697	89221706	IGKV2-28
+chr2	89244780	89244789	IGKV2-30
+chr2	89244780	89244789	IGKV2-30
+chr2	89268000	89268009	IGKV1-33
+chr2	89268000	89268009	IGKV1-33
+chr2	89297263	89297272	IGKV1-37
+chr2	89297263	89297272	IGKV1-37
+chr2	89319624	89319633	IGKV1-39
+chr2	89319624	89319633	IGKV1-39
+chr2	88885403	88885415	IGKV4-1
+chr2	88885403	88885426	IGKV4-1
+chr2	88897238	88897250	IGKV5-2
+chr2	88897238	88897261	IGKV5-2
+chr2	89851797	89851809	IGKV2D-40
+chr2	89851797	89851820	IGKV2D-40
+chr2	89862488	89862500	IGKV1D-39
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+chr2	89884746	89884769	IGKV1D-37
+chr2	89913988	89914000	IGKV1D-33
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+chr2	89936865	89936877	IGKV2D-30
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+chr2	89959985	89960008	IGKV2D-28
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+chr2	89985928	89985951	IGKV2D-26
+chr2	90004803	90004815	IGKV2D-24
+chr2	90004803	90004826	IGKV2D-24
+chr2	90021573	90021585	IGKV6D-21
+chr2	90021573	90021596	IGKV6D-21
+chr2	90038854	90038866	IGKV3D-20
+chr2	90038854	90038877	IGKV3D-20
+chr2	90069668	90069680	IGKV6D-41
+chr2	90069668	90069691	IGKV6D-41
+chr2	90082641	90082653	IGKV1D-17
+chr2	90082641	90082664	IGKV1D-17
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+chr2	90100242	90100265	IGKV1D-16
+chr2	90114844	90114856	IGKV3D-15
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+chr2	90154079	90154091	IGKV1D-13
+chr2	90154079	90154102	IGKV1D-13
+chr2	90159846	90159858	IGKV1D-12
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+chr2	90172808	90172820	IGKV3D-11
+chr2	90172808	90172831	IGKV3D-11
+chr2	90190199	90190211	IGKV1D-42
+chr2	90190199	90190222	IGKV1D-42
+chr2	90209879	90209891	IGKV1D-43
+chr2	90209879	90209902	IGKV1D-43
+chr2	90220733	90220745	IGKV1D-8
+chr2	90220733	90220756	IGKV1D-8
+chr2	90234818	90234830	IGKV3D-7
+chr2	90234818	90234841	IGKV3D-7
+chr2	88947309	88947321	IGKV1-5
+chr2	88947309	88947332	IGKV1-5
+chr2	88966270	88966282	IGKV1-6
+chr2	88966270	88966293	IGKV1-6
+chr2	88978476	88978488	IGKV3-7
+chr2	88978476	88978499	IGKV3-7
+chr2	88992417	88992429	IGKV1-8
+chr2	88992417	88992440	IGKV1-8
+chr2	89009990	89010002	IGKV1-9
+chr2	89009990	89010013	IGKV1-9
+chr2	89027179	89027191	IGKV3-11
+chr2	89027179	89027202	IGKV3-11
+chr2	89040232	89040244	IGKV1-12
+chr2	89040232	89040255	IGKV1-12
+chr2	89085185	89085197	IGKV3-15
+chr2	89085185	89085208	IGKV3-15
+chr2	89099867	89099879	IGKV1-16
+chr2	89099867	89099890	IGKV1-16
+chr2	89117350	89117362	IGKV1-17
+chr2	89117350	89117373	IGKV1-17
+chr2	89142582	89142594	IGKV3-20
+chr2	89142582	89142605	IGKV3-20
+chr2	89159759	89159771	IGKV6-21
+chr2	89159759	89159782	IGKV6-21
+chr2	89176336	89176348	IGKV2-24
+chr2	89176336	89176359	IGKV2-24
+chr2	89213431	89213443	IGKV1-27
+chr2	89213431	89213454	IGKV1-27
+chr2	89221706	89221718	IGKV2-28
+chr2	89221706	89221729	IGKV2-28
+chr2	89244789	89244801	IGKV2-30
+chr2	89244789	89244812	IGKV2-30
+chr2	89268009	89268021	IGKV1-33
+chr2	89268009	89268032	IGKV1-33
+chr2	89297272	89297284	IGKV1-37
+chr2	89297272	89297295	IGKV1-37
+chr2	89319633	89319645	IGKV1-39
+chr2	89319633	89319656	IGKV1-39
diff --git a/IGenotyper/data/target_regions.bed b/IGenotyper/data/target_regions.bed
index 1070647..5939744 100644
--- a/IGenotyper/data/target_regions.bed
+++ b/IGenotyper/data/target_regions.bed
@@ -1,105 +1,107 @@
-chr1	6489316	6491316
-chr1	17843891	17844891
-chr1	27604187	27606187
-chr1	41893599	41895599
-chr1	55196699	55198699
-chr1	68383504	68384504
-chr1	101243007	101245007
-chr1	151149013	151151013
-chr1	168189652	168191652
-chr1	186178900	186180900
-chr1	242178702	242179702
-chr10	73540236	73542236
-chr10	113556053	113558053
-chr10	132836099	132837099
-chr11	7828269	7829269
-chr11	23987984	23989984
-chr11	67130521	67131521
-chr11	120772738	120774738
-chr12	11547554	11549554
-chr12	47282667	47283667
-chr12	55768950	55770950
-chr13	27049219	27051219
-chr13	34272600	34274600
-chr13	75418751	75420751
-chr13	111173820	111175820
-chr14	20348972	20350972
-chr14	21574000	22622000
-chr14	52140749	52141749
-chr14	98908484	98909484
-chr14	105211718	105213718
-chr14	105500000	105900000
-chr15	35927334	35928334
-chr15	91561478	91563478
-chr16	689466	691466
-chr16	10880954	10881954
-chr16	65371805	65373805
-chr17	64990033	64992033
-chr17	71515458	71516458
-chr17	75785110	75787110
-chr18	52254674	52255674
-chr18	70199427	70201427
-chr18	77343828	77344828
-chr19	33160341	33162341
-chr19	52397652	52399652
-chr2	7827144	7829144
-chr2	14615225	14617225
-chr2	29314545	29316545
-chr2	37713253	37715253
-chr2	79636797	79638797
-chr2	88692260	90438260
-chr2	108962282	108964282
-chr2	145011376	145013376
-chr2	178741311	178742311
-chr20	10213785	10215785
-chr20	55383376	55385376
-chr22	17593280	17594280
-chr22	21957000	22961000
-chr22	31969372	31971372
-chr22	47811123	47813123
-chr3	2166648	2167648
-chr3	39103938	39105938
-chr3	79349425	79351425
-chr3	120802869	120804869
-chr3	136194634	136196634
-chr3	148032068	148033068
-chr3	180246439	180247439
-chr3	188856208	188858208
-chr4	41551347	41553347
-chr4	72378974	72379974
-chr4	84387425	84388425
-chr4	104453266	104455266
-chr4	178477869	178478869
-chr5	2363512	2365512
-chr5	6843922	6845922
-chr5	43710276	43712276
-chr5	156043704	156045704
-chr5	178435082	178437082
-chr6	4745925	4747925
-chr6	12533879	12535879
-chr6	21910885	21911885
-chr6	51745672	51747672
-chr6	144733195	144735195
-chr6	168264580	168265580
-chr7	12628626	12630626
-chr7	32139012	32140012
-chr7	42339972	42340972
-chr7	74038869	74040869
-chr7	98065551	98066551
-chr7	131056307	131058307
-chr7	139746578	139748578
-chr7	142260000	142850000
-chr7	152176268	152177268
-chr7_142346196_21653	1	21653
-chr7_142522138_20139	1	20139
-chr7_142767591_20379	1	20379
-chr8	4332271	4334271
-chr8	13500991	13502991
-chr8	29082788	29084788
-chr8	85511887	85512887
-chr8	121895764	121896764
-chr9	12671320	12673320
-chr9	90878417	90879417
-chr9	117366927	117368927
-chr9	133057235	133058235
-igh	1	1193129
+chr1	6489316	6491316
+chr1	17843891	17844891
+chr1	27604187	27606187
+chr1	41893599	41895599
+chr1	55196699	55198699
+chr1	68383504	68384504
+chr1	101243007	101245007
+chr1	151149013	151151013
+chr1	168189652	168191652
+chr1	186178900	186180900
+chr1	242178702	242179702
+chr10	73540236	73542236
+chr10	113556053	113558053
+chr10	132836099	132837099
+chr11	7828269	7829269
+chr11	23987984	23989984
+chr11	67130521	67131521
+chr11	120772738	120774738
+chr12	11547554	11549554
+chr12	47282667	47283667
+chr12	55768950	55770950
+chr13	27049219	27051219
+chr13	34272600	34274600
+chr13	75418751	75420751
+chr13	111173820	111175820
+chr14	20348972	20350972
+chr14	21574000	22622000
+chr14	52140749	52141749
+chr14	98908484	98909484
+chr14	105211718	105213718
+chr14	105500000	105900000
+chr15	35927334	35928334
+chr15	91561478	91563478
+chr16	689466	691466
+chr16	10880954	10881954
+chr16	65371805	65373805
+chr17	64990033	64992033
+chr17	71515458	71516458
+chr17	75785110	75787110
+chr18	52254674	52255674
+chr18	70199427	70201427
+chr18	77343828	77344828
+chr19	33160341	33162341
+chr19	52397652	52399652
+chr2	7827144	7829144
+chr2	14615225	14617225
+chr2	29314545	29316545
+chr2	37713253	37715253
+chr2	79636797	79638797
+chr2	88692260	90438260
+chr2	108962282	108964282
+chr2	145011376	145013376
+chr2	178741311	178742311
+chr20	10213785	10215785
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+chr22	17593280	17594280
+chr22	21957000	22961000
+chr22	31969372	31971372
+chr22	47811123	47813123
+chr3	2166648	2167648
+chr3	39103938	39105938
+chr3	79349425	79351425
+chr3	120802869	120804869
+chr3	136194634	136196634
+chr3	148032068	148033068
+chr3	180246439	180247439
+chr3	188856208	188858208
+chr4	41551347	41553347
+chr4	72378974	72379974
+chr4	84387425	84388425
+chr4	104453266	104455266
+chr4	178477869	178478869
+chr5	2363512	2365512
+chr5	6843922	6845922
+chr5	43710276	43712276
+chr5	156043704	156045704
+chr5	178435082	178437082
+chr6	4745925	4747925
+chr6	12533879	12535879
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+chr6	144733195	144735195
+chr6	168264580	168265580
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+chr7	42339972	42340972
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+chr7	98065551	98066551
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+chr7	139746578	139748578
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+chr8	85511887	85512887
+chr8	121895764	121896764
+chr9	12671320	12673320
+chr9	90878417	90879417
+chr9	117366927	117368927
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+igh	1	1193129
+chr22	22024092	22944092
+chr2	88857361	90235368