whatshap.yml

name: whatshap-latest
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bcftools=1.9=ha228f0b_4
  - bedtools=2.30.0=h468198e_3
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2021.1.19=h06a4308_0
  - certifi=2020.12.5=py36h06a4308_0
  - curl=7.71.1=hbc83047_1
  - krb5=1.18.2=h173b8e3_0
  - ld_impl_linux-64=2.33.1=h53a641e_7
  - libcurl=7.71.1=h20c2e04_1
  - libdeflate=1.0=h14c3975_1
  - libedit=3.1.20191231=h14c3975_1
  - libffi=3.3=he6710b0_2
  - libgcc-ng=11.2.0=h1d223b6_16
  - libgomp=11.2.0=h1d223b6_16
  - libssh2=1.9.0=h1ba5d50_1
  - libstdcxx-ng=11.2.0=he4da1e4_16
  - libzlib=1.2.11=h166bdaf_1014
  - ncurses=6.2=he6710b0_1
  - openssl=1.1.1j=h27cfd23_0
  - pip=20.3.3=py36h06a4308_0
  - python=3.6.12=hcff3b4d_2
  - readline=8.0=h7b6447c_0
  - setuptools=51.0.0=py36h06a4308_2
  - sqlite=3.33.0=h62c20be_0
  - tk=8.6.10=hbc83047_0
  - wheel=0.36.2=pyhd3eb1b0_0
  - xz=5.2.5=h7b6447c_0
  - zlib=1.2.11=h166bdaf_1014
  - pip:
    - biopython==1.78
    - dataclasses==0.8
    - decorator==4.4.2
    - networkx==2.5
    - numpy==1.19.4
    - pyfaidx==0.5.9.2
    - pysam==0.16.0.1
    - scipy==1.5.4
    - six==1.15.0
    - whatshap==1.1.dev78+g8f4c0c0
    - xopen==1.0.1