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    55 repositories

    • quactography

      Public
      Python
      •
      Apache License 2.0
      •5•1•0•0•Updated Dec 20, 2024Dec 20, 2024

    • disconets_flow

      Public
      Nextflow
      •2•0•1•0•Updated Dec 19, 2024Dec 19, 2024

    • nf-neuro

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •8•5•10•6•Updated Dec 19, 2024Dec 19, 2024

    • scilpy

      Public
      The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
      Python
      •
      Other
      •60•62•34•26•Updated Dec 18, 2024Dec 18, 2024

    • scilus_website

      Public
      SCIL website
      HTML
      •
      MIT License
      •6•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • mouseflow_documentation

      Public
      Python
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • teaching

      Public
      Python
      •1•0•0•1•Updated Dec 5, 2024Dec 5, 2024

    • containers-scilus

      Public
      Files needed to build a container to run all scilus flows.
      Dockerfile
      •4•2•1•1•Updated Nov 26, 2024Nov 26, 2024

    • nf-pediatric

      Public
      nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.
      Nextflow
      •
      MIT License
      •1•2•2•1•Updated Nov 25, 2024Nov 25, 2024

    • Infant-DWI

      Public
      Complete pipeline to perform tractography from infant diffusion MRI data.
      Nextflow
      •
      MIT License
      •2•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • combine_flows

      Public
      Shell
      •6•0•1•2•Updated Nov 6, 2024Nov 6, 2024

    • neurogister

      Public
      Python
      •1•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • tractometry_flow

      Public
      Nextflow
      •12•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • dmriqcpy

      Public
      Diffusion MRI Quality Check in python
      JavaScript
      •
      MIT License
      •9•8•3•2•Updated Nov 4, 2024Nov 4, 2024

    • rbx_flow

      Public
      Nextflow
      •
      MIT License
      •9•2•0•0•Updated Nov 2, 2024Nov 2, 2024

    • scil-documentation

      Public
      Documentation for the SCIL
      Python
      •15•4•8•2•Updated Sep 26, 2024Sep 26, 2024

    • tractoflow

      Public
      TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
      Nextflow
      •
      Other
      •23•53•7•1•Updated Sep 23, 2024Sep 23, 2024

    • nf-scil

      Public
      SCIL Nextflow Toolbox
      Nextflow
      •
      GNU General Public License v3.0
      •16•1•6•6•Updated Sep 16, 2024Sep 16, 2024

    • freewater_flow

      Public
      Nextflow
      •
      MIT License
      •5•5•1•0•Updated Sep 12, 2024Sep 12, 2024

    • nft-nifti

      Public
      Java
      •
      MIT License
      •3•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • bst_flow

      Public
      Bundle Specific Tractography pipeline
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • freesurfer_flow

      Public
      Nextflow
      •
      MIT License
      •3•0•1•1•Updated Jul 8, 2024Jul 8, 2024

    • noddi_flow

      Public
      Nextflow
      •
      MIT License
      •1•0•0•1•Updated Jun 25, 2024Jun 25, 2024

    • nf-tractoflow

      Public
      Nextflow
      •
      MIT License
      •1•0•1•0•Updated Jun 20, 2024Jun 20, 2024

    • .github

      Public
      0•0•0•0•Updated May 17, 2024May 17, 2024

    • atlas_arnold

      Public
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • connectoflow

      Public
      Nextflow
      •
      MIT License
      •5•3•3•0•Updated Jan 30, 2024Jan 30, 2024

    • tractometer_website

      Public
      HTML
      •
      MIT License
      •2•1•0•0•Updated Jan 23, 2024Jan 23, 2024

    • dmriqc_flow

      Public
      A Nextflow pipeline for diffusion MRI quality check
      Nextflow
      •
      MIT License
      •7•4•9•2•Updated Nov 24, 2023Nov 24, 2023

    • tractoflow_documentation

      Public
      Documentation related files for tractoflow
      Python
      •6•0•2•0•Updated Nov 6, 2023Nov 6, 2023