Repositories list

• NASC-seq2

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 26, 2024Jun 26, 2024

• dataprivacy

  Public
  Python

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  GNU General Public License v3.0

  •4•14•5•1•Updated Apr 29, 2024Apr 29, 2024

• txburst

  Public
  Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

  Jupyter Notebook

  •13•37•8•0•Updated Apr 22, 2024Apr 22, 2024

• compound-screen

  Public
  Python

  •1•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• NASC-seq

  Public
  Code and analysis pipeline for NASC-seq.

  Python

  •

  GNU General Public License v3.0

  •3•11•4•1•Updated Jun 14, 2022Jun 14, 2022

• molecularSpikes

  Public
  R

  •

  Other

  •0•1•0•0•Updated May 23, 2022May 23, 2022

• lncRNAs_bursting

  Public
  Count tables, R Code and Analyses for Johnsson et al., 2021

  R

  •

  GNU General Public License v3.0

  •1•5•1•0•Updated Nov 15, 2021Nov 15, 2021

• Smart-seq3

  Public
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

  Python

  •

  GNU General Public License v3.0

  •10•50•4•0•Updated Oct 8, 2021Oct 8, 2021

• Smart-seq3xpress

  Public
  Files related to Smart-seq3xpress

  Other

  •1•1•0•0•Updated Jul 12, 2021Jul 12, 2021

• aRME_and_bursting

  Public
  Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Mar 31, 2021Mar 31, 2021

• Spreading-Correction

  Public
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

  bioinformaticssingle-cell-sequencing

  Jupyter Notebook

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  MIT License

  •4•15•0•0•Updated Nov 3, 2020Nov 3, 2020