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    21 repositories

    • dataflow-java

      Public archive
      Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
      Java
      •
      Apache License 2.0
      •31•36•20•3•Updated Aug 9, 2023Aug 9, 2023

    • .allstar

      Public archive
      1•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • .github

      Public archive
      0•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • gcp-variant-transforms

      Public
      GCP Variant Transforms
      beambigquerydataflowvcf-files
      Python
      •
      Apache License 2.0
      •55•137•108•4•Updated Mar 31, 2022Mar 31, 2022

    • variant-annotation

      Public
      Use cloud technology to annotate human sequence variants in parallel.
      Jupyter Notebook
      •
      Apache License 2.0
      •11•11•2•1•Updated Jun 4, 2021Jun 4, 2021

    • readthedocs

      Public archive
      Documentation for the Google Genomics cookbook.
      Apache License 2.0
      •48•142•8•0•Updated May 20, 2020May 20, 2020

    • pipelines-tools

      Public
      Tools for developing and running pipelines with the Genomics API
      Go
      •
      Apache License 2.0
      •11•24•6•3•Updated Jan 16, 2020Jan 16, 2020

    • htsget

      Public archive
      Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage
      Go
      •
      Apache License 2.0
      •10•24•5•5•Updated Nov 19, 2019Nov 19, 2019

    • gcp-deepvariant-runner

      Public
      This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.
      Python
      •
      Apache License 2.0
      •6•2•7•4•Updated Sep 11, 2019Sep 11, 2019

    • cloudml-examples

      Public archive
      Examples of using CloudML with genomic data.
      Python
      •
      Apache License 2.0
      •11•18•0•0•Updated May 24, 2019May 24, 2019

    • beacon-go

      Public
      AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.
      Go
      •
      Apache License 2.0
      •6•4•1•1•Updated Dec 14, 2018Dec 14, 2018

    • ga4gh-identity

      Public archive
      GA4GH Researcher Identity Tools
      Go
      •
      Apache License 2.0
      •2•2•3•0•Updated Oct 15, 2018Oct 15, 2018

    • pipelines-api-examples

      Public archive
      Examples for the Google Genomics Pipelines API.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•50•12•0•Updated Dec 15, 2017Dec 15, 2017

    • dockerflow

      Public archive
      Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
      Java
      •
      Apache License 2.0
      •17•97•7•0•Updated Nov 21, 2017Nov 21, 2017

    • utils-java

      Public archive
      Common Java files for Google Genomics integrations.
      Java
      •
      Apache License 2.0
      •11•5•6•0•Updated Oct 30, 2017Oct 30, 2017

    • datalab-examples

      Public archive
      Example Cloud Datalab iPython Notebooks for genomics use cases.
      Jupyter Notebook
      •
      Apache License 2.0
      •9•25•1•0•Updated Sep 5, 2017Sep 5, 2017

    • grid-computing-tools

      Public archive
      Scripts and samples for using Grid Engine on Google Cloud Platform.
      Shell
      •
      Apache License 2.0
      •5•13•3•0•Updated Aug 2, 2017Aug 2, 2017

    • bigquery-examples

      Public archive
      Advanced BigQuery examples on genomic data.
      Python
      •
      Apache License 2.0
      •31•89•7•0•Updated Jun 9, 2017Jun 9, 2017

    • getting-started-bigquery

      Public archive
      Examples of how to get started with genomics data in BigQuery in many languages.
      R
      •
      Apache License 2.0
      •25•53•1•0•Updated Jun 9, 2017Jun 9, 2017

    • elasticluster

      Public archive
      Python
      •150•9•6•0•Updated Feb 14, 2017Feb 14, 2017

    • spark-examples

      Public archive
      Apache Spark jobs such as Principal Coordinate Analysis.
      Scala
      •
      Apache License 2.0
      •38•74•10•0•Updated Jan 30, 2017Jan 30, 2017