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@cmc-aau Center for Microbial Communities, Aalborg University, DK

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    27 repositories

    • biocloud-docs

      Public
      Documentation website for our HPC cluster (and the likes)
      Apache License 2.0
      •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • alphafold_singularity

      Public
      Singularity recipe for AlphaFold
      Python
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • biocloud-software

      Public
      Repo for all sorts of software, mainly modules or containers
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • mfd_sr_mags

      Public
      Repository for phylogenetic overview of short-read MAGs from the Microflora Danica project
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • nanopore_16Samp

      Public
      Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • mfd_danish_vs_global_microbiome_section

      Public
      This is a repo for the Danish vs global microbiome section of the MFD paper
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • snakemake_project_template

      Public template
      Testing snakemake
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • mfd_hab_class

      Public
      Repo for MFD Ontology habitat classification using microbial fingerprint
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • mfd_overview

      Public
      General statistics and plots to summarize the MFD project
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • mfd_novelty_section

      Public
      This is a repo for the novelty section of the MFD paper 1.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • mfd_wiki

      Public
      Wiki of the Microflora Danica project
      GNU General Public License v3.0
      •0•5•0•0•Updated Jul 31, 2024Jul 31, 2024

    • ood-ansible

      Public
      An ansible role for Open Ondemand
      Jinja
      •
      MIT License
      •31•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • mfd_metadata

      Public
      Metadata cleaning and report making for the Microflora Danica project
      HTML
      •
      GNU General Public License v3.0
      •1•4•2•0•Updated Feb 13, 2024Feb 13, 2024

    • deepops

      Public
      Used for BioCloud provisioning, don't edit
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •331•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • biowide_net

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • Slurm_tools

      Public
      My tools for the Slurm HPC workload manager
      Shell
      •
      GNU General Public License v3.0
      •97•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • mfd_plasmid_classification

      Public
      ...
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • mfd-data

      Public
      Nextcloud for sharing data
      Jinja
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • AutoTax

      Public
      Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • ansible-role-lmod

      Public
      deploys Lmod
      Jinja
      •
      MIT License
      •14•0•0•0•Updated Mar 26, 2023Mar 26, 2023

    • rstudio_server_setup

      Public
      A guide on how to install RStudio Server on any Linux VM/machine
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • split_overlapping_regions

      Public
      Python
      •1•0•0•0•Updated Dec 21, 2022Dec 21, 2022

    • ps_script

      Public
      Python
      •1•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • AmpProc

      Public
      Illumina sequenced amplicon reads processing workflow
      Shell
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Oct 14, 2022Oct 14, 2022

    • MiSEQ_testbarcodes

      Public
      Test an Illumina MiSEQ run for cross-talk and sample bleedover
      Shell
      •
      MIT License
      •1•1•0•0•Updated Jun 13, 2022Jun 13, 2022

    • learn-git

      Public
      Practice using git(hub)
      MIT License
      •4•0•0•0•Updated Feb 17, 2022Feb 17, 2022