Repositories list

• spatialPlaybook

  Public
  HTML

  •0•0•5•0•Updated Jan 8, 2025Jan 8, 2025

• clustSIGNAL

  Public
  clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning

  R

  •0•2•1•0•Updated Jan 7, 2025Jan 7, 2025

• HEtoSGEBench

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• ClassifyRPlaybook

  Public
  CSS

  •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

• ClassifyR

  Public
  A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

  R

  •4•5•3•0•Updated Dec 21, 2024Dec 21, 2024

• spicyR

  Public
  R

  •4•8•9•0•Updated Dec 18, 2024Dec 18, 2024

• ClassifyR3analytics

  Public
  Analyses for best practices guide to ClassifyR multi-view modelling

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• BenchHub

  Public
  R

  •

  Other

  •0•0•3•0•Updated Dec 13, 2024Dec 13, 2024

• SpatialDatasets

  Public
  R

  •0•0•1•0•Updated Dec 9, 2024Dec 9, 2024

• Statial

  Public
  rsingle-cell

  R

  •1•5•1•0•Updated Dec 5, 2024Dec 5, 2024

• HKUST_workshop

  Public
  workshop

  HTML

  •

  MIT License

  •1•1•0•0•Updated Dec 5, 2024Dec 5, 2024

• scFeatures

  Public
  R

  •2•10•9•0•Updated Nov 28, 2024Nov 28, 2024

• MultiP_fairness

  Public
  0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• lisaClust

  Public
  R

  •1•3•6•0•Updated Nov 22, 2024Nov 22, 2024

• spicyWorkflow

  Public
  Perform spatial analysis of in situ cytometry data in R

  spatial-statistics

  GNU General Public License v3.0

  •0•5•4•0•Updated Nov 18, 2024Nov 18, 2024

• ChimpLipidomics

  Public
  Code repository for analysis in chimp lipidomics project

  0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• SpatialSimBench

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• NEMoE

  Public
  Regularized Mixture of Experts Model

  C++

  •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• SpatialSimbench_website

  Public
  JavaScript

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• scdneySpatial_BiocAsia2024

  Public
  scdney spatial workshop for ABACBS 2024

  Dockerfile

  •

  Other

  •2•0•1•1•Updated Nov 7, 2024Nov 7, 2024

• BioCAsia_2024_wSIR

  Public
  Dockerfile

  •

  Other

  •2•0•1•0•Updated Nov 7, 2024Nov 7, 2024

• ABACBS2024_EMCR_Hackathon_Spatial_Biology

  Public
  Repository around EMCR Hackathon at ABACBS 2024 Conference

  HTML

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• clustSIGNAL_workshop

  Public
  Spatial transcriptomics data analysis – spatially-aware clustering with clustSIGNAL

  Dockerfile

  •

  Other

  •1•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• SpatialSimbenchQuartoOJS

  Public
  JavaScript

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• CLUEY

  Public
  R

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• SpatialUtils

  Public
  Utility functions for spatial omics data

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• SpatialFeatures

  Public
  An R package to extract features from singcell spatial genomics

  R

  •0•1•0•0•Updated Oct 18, 2024Oct 18, 2024

• wSIR

  Public
  Weighted Sliced Inverse Regression for spatial omics data analysis

  R

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• SpatioMark

  Public
  Figure Generation for SpatioMark Manuscript

  R

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• StabMap

  Public
  Mosaic single cell data integration using non-overlapping features

  R

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024