Repositories list

• scallop2

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •7•9•4•0•Updated Nov 18, 2024Nov 18, 2024

• aletsch

  Public
  Assembler for multiple RNA-seq samples

  rna-seqsingle-celltranscriptome-assembly+ 1meta-assembly

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•1•0•Updated Nov 18, 2024Nov 18, 2024

• rnaseqtools

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• EquiRep-test

  Public
  C++

  •0•0•0•0•Updated Nov 10, 2024Nov 10, 2024

• TENNIS

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• lecture-notes-for-algorithms

  Public
  TeX

  •2•30•0•0•Updated Nov 6, 2024Nov 6, 2024

• anchorage

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• anchorage-test

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• TENNIS-test

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• dcj-sat

  Public
  C++

  •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• beaver-test

  Public
  Python

  •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• EquiRep

  Public
  C++

  •0•2•0•0•Updated Nov 2, 2024Nov 2, 2024

• beaver

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• SubseqHash2

  Public
  Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

  simdlocality-sensitiveminimized-subsequence

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Oct 29, 2024Oct 29, 2024

• SubseqEmbed

  Public
  C++

  •0•0•0•0•Updated Oct 27, 2024Oct 27, 2024

• bamkit

  Public
  A tool to process bam/sam files

  rna-seqsam-bam

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•1•Updated Jun 20, 2024Jun 20, 2024

• lsb-learn

  Public
  A learning algorithm for locality-sensitive bucketing functions

  locality-sensitive-hashinginception-networklocality-sensitive-bucketing

  Python

  •2•1•0•0•Updated Mar 19, 2024Mar 19, 2024

• altai

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Feb 29, 2024Feb 29, 2024

• TERRACE

  Public
  An assembler for circular RNAs

  rna-seqassemblycircrna+ 1back-splicing-junction

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•0•0•Updated Feb 16, 2024Feb 16, 2024

• aletsch-test

  Public
  Shell

  •1•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• altai-test

  Public
  Python

  •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• irtool

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•0•0•Updated Nov 14, 2023Nov 14, 2023

• TERRACE-test

  Public
  Python

  •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

• lsbucketing

  Public
  C

  •0•3•0•0•Updated Sep 15, 2023Sep 15, 2023

• rnabridge-denovo

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•1•0•Updated Jun 11, 2023Jun 11, 2023

• fracSubseqHash

  Public
  C++

  •0•0•0•0•Updated May 12, 2023May 12, 2023

• kmerspace

  Public
  C++

  •1•0•0•0•Updated Apr 10, 2023Apr 10, 2023

• subseqhash

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•8•0•0•Updated Feb 10, 2023Feb 10, 2023

• kbhashing

  Public
  C++

  •0•1•0•0•Updated Jun 15, 2022Jun 15, 2022

• metagenome-analysis

  Public
  Shell

  •1•4•0•0•Updated Feb 16, 2022Feb 16, 2022