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    21 repositories

    • phibase-pipeline

      Public
      Pipeline for releasing data from PHI-base version 5
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • phipo

      Public
      Pathogen-Host Interaction Phenotype Ontology
      obofoundryontology
      Makefile
      •
      Other
      •5•5•29•0•Updated Oct 16, 2024Oct 16, 2024

    • phi4pipeline

      Public
      Pipeline for creating release formats of PHI-base 4 datasets
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • FunCat

      Public
      Functional categorisation of PHI-base proteins
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2024Sep 7, 2024

    • data

      Public
      Archives of PHI-base data releases, and other data.
      Python
      •
      Creative Commons Attribution 4.0 International
      •7•7•6•0•Updated Aug 27, 2024Aug 27, 2024

    • phi-eco

      Public
      The PHI-base experimental conditions ontology
      Shell
      •
      Other
      •0•1•2•0•Updated Mar 27, 2024Mar 27, 2024

    • canto-docs

      Public
      User documentation for the PHI-Canto project
      Python
      •
      MIT License
      •0•0•13•0•Updated Jun 12, 2023Jun 12, 2023

    • canto

      Public
      The pathogen-host interaction community annotation tool
      JavaScript
      •
      Other
      •7•1•0•0•Updated Jun 12, 2023Jun 12, 2023

    • phipo_ext

      Public
      PHIPO Extension Ontology
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•0•Updated Mar 7, 2023Mar 7, 2023

    • phido

      Public
      The PHI-base disease list
      Other
      •1•0•3•0•Updated Jun 21, 2022Jun 21, 2022

    • phi-nets

      Public
      Protein-Protein interaction network scripts
      Java
      •
      MIT License
      •2•1•0•2•Updated Aug 2, 2021Aug 2, 2021

    • PHI5_web_display

      Public
      PHI5_web_display will allow to display PHI-Canto data
      HTML
      •0•1•5•0•Updated Jun 27, 2020Jun 27, 2020

    • odk-vagrant

      Public
      Vagrant setup for using the Ontology Development Kit on Windows
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 2, 2019Apr 2, 2019

    • phi4api-parser

      Public
      Java
      •0•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • phi4api-webpages

      Public
      website
      JavaScript
      •1•0•0•0•Updated Jan 10, 2018Jan 10, 2018

    • phi-blast

      Public
      PHI-base BLAST server
      phi-blast
      Ruby
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Nov 25, 2017Nov 25, 2017

    • curation

      Public
      PHI-base curation
      trackercuration
      0•0•20•0•Updated Jun 22, 2017Jun 22, 2017

    • phibaseAlistairIrvine-parser

      Public archive
      Parses the curated PHI-base spreadsheet, validates, then copies the data into the postgreSQL database
      Web Ontology Language
      •0•0•0•0•Updated Feb 4, 2016Feb 4, 2016

    • ensembl_mapping

      Public
      Scripts for mapping PHI-base data to Ensembl Genomes
      0•0•0•0•Updated Feb 4, 2016Feb 4, 2016

    • fasta-parsing

      Public
      scripts and data to generate FASTA files
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 20, 2016Jan 20, 2016

    • phi4-parser_no-api

      Public archive
      Loads the PHI-base 4 spreadsheet data into the MySQL database
      Java
      •0•0•0•0•Updated Mar 31, 2015Mar 31, 2015