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@NIH-NCPI NIH Cloud Platform Interoperability Program

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    38 repositories

    • map-dragon

      Public
      JavaScript
      •0•2•0•2•Updated Nov 28, 2024Nov 28, 2024

    • locutus

      Public
      Terminology Management Web API
      Python
      •0•2•1•3•Updated Nov 26, 2024Nov 26, 2024

    • ncpi-fhir-ig-2

      Public
      NCPI FHIR IG 2
      fhir-igncpi-fhir
      GLSL
      •1•3•29•0•Updated Nov 26, 2024Nov 26, 2024

    • abacus

      Public
      Functions for data dictionary validation and summaries
      Python
      •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

    • ncpi-whistler

      Public
      Data Harmonization Pipeline For NCPI Data Into FHIR
      etl
      Python
      •0•0•6•0•Updated Nov 20, 2024Nov 20, 2024

    • locutus_utilities

      Public
      Python
      •0•1•0•0•Updated Nov 19, 2024Nov 19, 2024

    • locutus-ops

      Public
      `Locutus-ops` (operations) is built to execute various actions or tasks based on `Locutus` as the underlying framework.
      0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • Interoperability-Projects

      Public
      Holds an overview of the currently active NCPI interoperability projects with brief descriptions of each project and links to the projects work, where available.
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • .github

      Public
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • HAPI-Dev

      Public
      Just a quick set of scripts to bring up a local HAPI FHIR server with persistentence to local disk
      Python
      •0•1•0•1•Updated Sep 16, 2024Sep 16, 2024

    • dockerized-whistle

      Public
      Docker image for google's Whistle FHIR ingest language
      Shell
      •0•1•0•0•Updated Aug 20, 2024Aug 20, 2024

    • ncpi-fhir-client

      Public
      Provide basic fhir client with built-in modular authentication
      Python
      •0•0•3•0•Updated Jul 30, 2024Jul 30, 2024

    • ncpi-fhir-shiny-browser

      Public
      fhirncpi-fhir
      R
      •0•2•0•0•Updated Jul 16, 2024Jul 16, 2024

    • ncpi-fhir-ig

      Public
      🔥 NCPI FHIR Implementation Guide
      fhir-igncpi-fhir
      GLSL
      •
      Creative Commons Zero v1.0 Universal
      •2•5•12•3•Updated Mar 4, 2024Mar 4, 2024

    • NCPI-Whistler-Tutorial

      Public
      Step by Step Instructions for Converting CSV Research Style Data into FHIR Using Whistle
      etlfhirncpi-whistlertutorial
      0•2•0•0•Updated Oct 6, 2023Oct 6, 2023

    • ncpi-study-summary-generation-tool

      Public archive
      Summarize FHIR data into FHIR Observations
      Python
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • r4b-hapi-fhir

      Public archive
      R4 HAPI FHIR
      Java
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Jun 3, 2023Jun 3, 2023

    • ncpi-fhir-utility

      Public archive
      🛠 FHIR model tooling (validation, xml/json conversion, publish to server)
      dockermodelpython3fhir
      Python
      •
      Apache License 2.0
      •4•0•8•3•Updated May 22, 2023May 22, 2023

    • ncpi-fhir-study-summary-browser

      Public archive
      A dashboard / browser for NCPI Study Summary data
      R
      •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

    • prometheus

      Public archive
      Bringing FHIR to researchers
      fhir-anvil
      Python
      •0•0•0•0•Updated Mar 14, 2023Mar 14, 2023

    • wwDDENT

      Public archive
      POC Website for NCPI Data Dictionary Extraction and NLP Tool
      Python
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • PyDDENT

      Public archive
      NCPI Data Dictionary Extraction and NLP Tool - Python
      Python
      •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • dockerized-whistler

      Public archive
      A Docker Container and helper scripts that provide the full functionality of NCPI Whistler in an easy to install and use form.
      Shell
      •0•0•2•0•Updated Dec 12, 2022Dec 12, 2022

    • summarize-fhir

      Public archive
      Summarize FHIR datasets that conform to the NCPI FHIR IG (with data-dictionary module)
      Python
      •0•0•0•0•Updated Sep 30, 2022Sep 30, 2022

    • GTEx-Public-FHIR-Whistle-Projector

      Public archive
      Public GTEx projector for Whistle
      0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

    • FHIR-CAT-June22

      Public archive
      Technical interop pilot using RNASeq data
      Jupyter Notebook
      •3•1•4•1•Updated Jul 13, 2022Jul 13, 2022

    • NCPI_use_case_tracker

      Public archive
      This repo is for tracking NCPI interoperability use cases.
      1•3•21•1•Updated Jun 14, 2022Jun 14, 2022

    • ncpi-fhir-study-summary-ig

      Public archive
      Implementation Guide governing storage of Summary Data in FHIR
      GLSL
      •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

    • ncpi-search-activities

      Public archive
      Issue tracker for NCPI search group activities.
      0•0•5•0•Updated Oct 29, 2021Oct 29, 2021

    • ncpi-ui-fhir-data-dashboard

      Public archive
      💡📊 Prototype FHIR data dashboard - what's in my FHIR server?
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 11, 2021Oct 11, 2021