diff --git a/apps/platform/src/pages/VariantPage/Profile.tsx b/apps/platform/src/pages/VariantPage/Profile.tsx
index 7be750c7d..d8707401b 100644
--- a/apps/platform/src/pages/VariantPage/Profile.tsx
+++ b/apps/platform/src/pages/VariantPage/Profile.tsx
@@ -1,12 +1,71 @@
+import { Suspense, lazy } from "react";
+import {
+ // PlatformApiProvider,
+ SectionContainer,
+ SummaryContainer,
+ SectionLoader,
+} from "ui";
+
+import InSilicoPredictorsSummary from "sections/src/variant/InSilicoPredictors/Summary";
+import EVASummary from "sections/src/variant/EVA/Summary";
+import UniProtVariantsSummary from "sections/src/variant/UniProtVariants/Summary";
+
import ProfileHeader from "./ProfileHeader";
+const InSilicoPredictorsSection = lazy(() => import("sections/src/variant/InSilicoPredictors/Body"));
+const EVASection = lazy(() => import("sections/src/variant/EVA/Body"));
+const UniProtVariantsSection = lazy(() => import("sections/src/variant/UniProtVariants/Body"));
+
+const summaries = [
+ InSilicoPredictorsSummary,
+ EVASummary,
+ UniProtVariantsSummary
+];
+
+const VARIANT = "variant";
+
+// !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+// TO DO (see e.g. profile.jsx for the evidence page):
+// - VARIANT_PROFILE_SUMMARY_FRAGMENT
+// - EVIDENCE_PROFILE_QUERY
+// !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
type ProfileProps = {
varId: string;
};
function Profile({ varId }: ProfileProps) {
- return
+ return (
+ // !!!!!!!!!!
+ // PUT EVERYTHING INSIDE INSTEAD OF FRAGMENT
+ // !!!!!!!!!!
+ <>
+
+
+
+
+
+
+
+
+
+
+ }>
+
+
+ }>
+
+
+ }>
+
+
+ {/* NEED ANYTHING IN ???? see evidence page */}
+
+
+ >
+
+ );
}
diff --git a/apps/platform/src/pages/VariantPage/types.ts b/apps/platform/src/pages/VariantPage/types.ts
index 24c24585d..3e3de5f40 100644
--- a/apps/platform/src/pages/VariantPage/types.ts
+++ b/apps/platform/src/pages/VariantPage/types.ts
@@ -1,3 +1,8 @@
+
+// ========
+// Metadata
+// ========
+
export type AlleleFrequencyType = {
populationName: string;
alleleFrequency: number;
@@ -37,5 +42,56 @@ export type MetadataType = {
alleleType: string;
alleleFrequencies: AlleleFrequencyType[];
vep: VepType;
- inSilicoPredictors: InSilicoPredictorsType;
-};
\ No newline at end of file
+};
+
+// ==================
+// InSilicoPredictors
+// ==================
+
+export type InSilicoPredictorsType = {
+ [index: number]: {
+ method: string,
+ assesessment?: string,
+ flag?: string,
+ score?: number,
+ }
+};
+
+// =======
+// ClinVar
+// =======
+
+export type ClinVarType = {
+ alleleOrigins: string[],
+ alleleRequirements: string[],
+ approvedSymbol: string,
+ clinicalSignificances: string[],
+ cohortPhenotypes: string[],
+ confidence: string,
+ directionOnTrait: "risk",
+ "disease.id": string,
+ "disease.name": string,
+ diseaseFromSource: string,
+ diseaseId: string,
+ diseaseName: string,
+ literature: string[],
+ studyId: string,
+ targetId: string,
+ variantId: string,
+};
+
+// ===============
+// UniProtVariants
+// ===============
+
+export type UniProtVariants = {
+ variantId: string,
+ confidence: string,
+ diseaseFromSource: string,
+ literature: string[],
+ targetFromSourceId: string,
+ "target.id": string,
+ "target.approvedSymbol": string,
+ "disease.id": string,
+ "disease.name": string,
+};
diff --git a/apps/platform/src/sections/variantSections.js b/apps/platform/src/sections/variantSections.js
new file mode 100644
index 000000000..6332e4972
--- /dev/null
+++ b/apps/platform/src/sections/variantSections.js
@@ -0,0 +1,7 @@
+import { lazy } from "react";
+
+const variantSections = new Map([
+ ["eva", lazy(() => import("sections/src/evidence/EVA/Body"))],
+]);
+
+export default variantSections;
diff --git a/packages/sections/src/variant/EVA/Body.tsx b/packages/sections/src/variant/EVA/Body.tsx
new file mode 100644
index 000000000..4a222b85e
--- /dev/null
+++ b/packages/sections/src/variant/EVA/Body.tsx
@@ -0,0 +1,2964 @@
+import {
+ Link,
+ Tooltip,
+ SectionItem,
+ PublicationsDrawer,
+ DataTable,
+ ClinvarStars,
+} from "ui";
+import { Typography } from "@mui/material";
+import {
+ clinvarStarMap,
+ naLabel,
+ defaultRowsPerPageOptions,
+} from "../../constants";
+import { definition } from ".";
+
+import Description from "./Description";
+import { epmcUrl } from "../../utils/urls";
+import { sentenceCase } from "../../utils/global";
+
+// !! NEEDED??
+const onLinkClick = e => {
+ // handler to stop propagation of clicks on links in table rows
+ // to avoid selection of a different row
+ e.stopPropagation();
+};
+
+function getColumns(label: string) {
+ return [
+ {
+ id: "disease.name",
+ label: "Disease/phenotype",
+ renderCell: (d) => { // !! DESTRUCTURE AS NORMAL WHEN USE GQL WITHOUT THESE ODD PROPERTY NAMES
+ const disease_id = d["disease.id"]
+ const disease_name = d["disease.name"];
+ const { diseaseFromSource, cohortPhenotypes } = d;
+ return (
+
+
+ Reported disease or phenotype:
+
+
+ {diseaseFromSource}
+
+ {cohortPhenotypes?.length > 1 ? (
+ <>
+
+ All reported phenotypes:
+
+
+ {cohortPhenotypes.map(cp => (
+ {cp}
+ ))}
+
+ >
+ ) : (
+ ""
+ )}
+ >
+ }
+ showHelpIcon
+ >
+ {/* !! ANY !! as any needed below since onClick sig expects no args !! */}
+
+ {disease_name}
+
+
+ )
+ },
+ exportLabel: "Disease/Phenotype",
+ exportValue: disease_name => disease_name,
+ filterValue: disease_name => disease_name,
+ },
+ {
+ id: "studyId",
+ label: "ClinVar ID",
+ renderCell: ({ studyId }) =>
+ studyId ? (
+
+ {studyId}
+
+ ) : (
+ naLabel
+ ),
+ exportLabel: "ClinVar ID",
+ },
+ {
+ id: "clinicalSignificances",
+ label: "Clinical significance",
+ renderCell: ({ clinicalSignificances }) => {
+ if (!clinicalSignificances) return naLabel;
+ if (clinicalSignificances.length === 1) return sentenceCase(clinicalSignificances[0]);
+ if (clinicalSignificances.length > 1)
+ return (
+
+ {clinicalSignificances.map(clinicalSignificance => (
+ - {sentenceCase(clinicalSignificance)}
+ ))}
+
+ );
+ return naLabel;
+ },
+ filterValue: ({ clinicalSignificances }) => clinicalSignificances.join(),
+ },
+ {
+ id: "allelicRequirements",
+ label: "Allele origin",
+ renderCell: ({ alleleOrigins, allelicRequirements }) => {
+ if (!alleleOrigins || alleleOrigins.length === 0) return naLabel;
+ if (allelicRequirements)
+ return (
+
+
+ Allelic requirements:
+
+ {allelicRequirements.map(r => (
+
+ {r}
+
+ ))}
+ >
+ }
+ showHelpIcon
+ >
+ {alleleOrigins.map(a => sentenceCase(a)).join("; ")}
+
+ );
+ return alleleOrigins.map(a => sentenceCase(a)).join("; ");
+ },
+ filterValue: ({ alleleOrigins }) => (alleleOrigins ? alleleOrigins.join() : ""),
+ },
+ {
+ id: "reviewStatus",
+ label: "Review status",
+ renderCell: ({ confidence }) => (
+
+
+
+
+
+ ),
+ },
+ {
+ id: "literature",
+ label: "Literature",
+ renderCell: ({ literature }) => {
+ const literatureList =
+ literature?.reduce((acc, id) => {
+ if (id !== "NA") {
+ acc.push({
+ name: id,
+ url: epmcUrl(id),
+ group: "literature",
+ });
+ }
+ return acc;
+ }, []) || [];
+ return (
+
+ );
+ },
+ },
+ ];
+}
+
+// !!!! LOAD LOCAL DATA FOR NOW
+// const [metadata, setMetadata] =
+// useState("waiting");
+const request = mockQuery();
+
+type BodyProps = {
+ id: string,
+ label: string,
+ entity: string,
+};
+
+function Body({ id, label, entity }: BodyProps) {
+
+ const columns = getColumns(label);
+ const rows = request.data.variant.eva;
+
+ return (
+ }
+ renderBody={() => (
+
+ )}
+ />
+ );
+
+}
+
+export default Body;
+
+
+// !! HARDCODE DATA FOR NOW !!
+function mockQuery() {
+ return {
+ loading: false,
+ error: undefined,
+ data: JSON.parse(`
+{
+ "variant": {
+ "eva": [
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014443",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014443",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Epilepsy, progressive myoclonic, type 5",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014441",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Epilepsy, progressive myoclonic, type 5",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014441",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014440",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014440",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "maternal"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000184011",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001198082",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001004604",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001004604",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011283",
+ "disease.name": "mitochondrial DNA depletion syndrome 1",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Familial spastic paraparesis",
+ "Hereditary spastic paraplegia"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0019064",
+ "disease.name": "hereditary spastic paraplegia",
+ "diseaseFromSource": "Hereditary spastic paraplegia",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001847600",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Inborn genetic diseases"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "EFO_0000508",
+ "disease.name": "genetic disorder",
+ "diseaseFromSource": "Inborn genetic diseases",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV002316195",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV001004604",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
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+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Spinocerebellar ataxia with epilepsy"
+ ],
+ "confidence": "no assertion criteria provided",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016809",
+ "disease.name": "spinocerebellar ataxia with epilepsy",
+ "diseaseFromSource": "Spinocerebellar ataxia with epilepsy",
+ "diseaseId": "EFO_0000508",
+ "diseaseName": "genetic disorder",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014442",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014443",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline",
+ "maternal",
+ "paternal"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Epilepsy, progressive myoclonic, type 5",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014441",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014440",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "allelicRequirements": [
+ "Autosomal recessive inheritance"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "literature": [
+ "11431686",
+ "11571332",
+ "12565911",
+ "14694057",
+ "15122711",
+ "15477547",
+ "15824347",
+ "16130100",
+ "16177225",
+ "17426723",
+ "19251978",
+ "21276947",
+ "26942291",
+ "26942292",
+ "632821"
+ ],
+ "studyId": "RCV000014440",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "maternal"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1"
+ ],
+ "confidence": "criteria provided, multiple submitters, no conflicts",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000184011",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001198082",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Diffuse cerebral degeneration in infancy",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive sclerosing poliodystrophy"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001004604",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0018002",
+ "disease.name": "adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008003",
+ "disease.name": "autosomal dominant progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MITOCHONDRIAL NEUROGASTROINTESTINAL ENCEPHALOPATHY SYNDROME, TYMP-RELATED",
+ "MNGIE, POLG-RELATED",
+ "MNGIE, TYMP-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA Depletion Syndrome, MNGIE Form",
+ "Mitochondrial DNA depletion syndrome 1",
+ "Mitochondrial DNA depletion syndrome 1 (MNGIE type)",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Mitochondrial neurogastrointestinal encephalomyopathy syndrome",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "POLIP SYNDROME",
+ "POLYNEUROPATHY, OPHTHALMOPLEGIA, LEUKOENCEPHALOPATHY, AND INTESTINAL PSEUDOOBSTRUCTION",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011283",
+ "disease.name": "mitochondrial DNA depletion syndrome 1",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV000515354",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0016810",
+ "disease.name": "autosomal recessive progressive external ophthalmoplegia",
+ "diseaseFromSource": "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA, AUTOSOMAL DOMINANT 1",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0017575",
+ "disease.name": "mitochondrial neurogastrointestinal encephalomyopathy",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4b",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001731286",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseFromSource": "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ },
+ {
+ "alleleOrigins": [
+ "germline"
+ ],
+ "approvedSymbol": "POLG",
+ "clinicalSignificances": [
+ "pathogenic"
+ ],
+ "cohortPhenotypes": [
+ "Alpers Syndrome",
+ "Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis",
+ "Alpers disease",
+ "Alpers progressive infantile poliodystrophy",
+ "Alpers-Huttenlocher Syndrome",
+ "Cerebellar ataxia infantile with progressive external ophthalmoplegia",
+ "Diffuse cerebral degeneration in infancy",
+ "Epilepsy, progressive myoclonic, type 5",
+ "Infantile poliodystrophy",
+ "MNGIE, POLG-RELATED",
+ "Mitochondrial DNA Depletion Syndrome 4A",
+ "Mitochondrial DNA depletion syndrome 4A (Alpers type)",
+ "Mitochondrial DNA depletion syndrome 4B, MNGIE type",
+ "Mitochondrial DNA depletion syndrome 4b",
+ "Mitochondrial Neurogastrointestinal Encephalopathy Disease, POLG-Related",
+ "Neuronal degeneration of childhood with liver disease, progressive",
+ "Poliodystrophia cerebri progressiva",
+ "Progressive cerebral poliodystrophy",
+ "Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 1",
+ "Progressive external ophthalmoplegia, autosomal recessive 1",
+ "Progressive sclerosing poliodystrophy",
+ "SENSORY ATAXIC NEUROPATHY WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE",
+ "Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis",
+ "Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome"
+ ],
+ "confidence": "criteria provided, single submitter",
+ "directionOnTrait": "risk",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a",
+ "diseaseFromSource": "Progressive sclerosing poliodystrophy",
+ "diseaseId": "MONDO_0044970",
+ "diseaseName": "mitochondrial disease",
+ "studyId": "RCV001813983",
+ "targetId": "ENSG00000140521",
+ "variantId": "15_89327201_C_T"
+ }
+ ]
+ }
+}`),
+ };
+}
\ No newline at end of file
diff --git a/packages/sections/src/variant/EVA/Description.tsx b/packages/sections/src/variant/EVA/Description.tsx
new file mode 100644
index 000000000..be03b02b6
--- /dev/null
+++ b/packages/sections/src/variant/EVA/Description.tsx
@@ -0,0 +1,18 @@
+import { Link } from "ui";
+
+type DescriptionProps = {
+ variantId: string;
+};
+
+function Description({ variantId }: DescriptionProps) {
+ return (
+ <>
+ Genetic variation from clinical submissions associating {variantId} to a disease/phenotype. Source:{" "}
+
+ EVA
+
+ >
+ );
+}
+
+export default Description;
diff --git a/packages/sections/src/variant/EVA/Summary.tsx b/packages/sections/src/variant/EVA/Summary.tsx
new file mode 100644
index 000000000..437471d25
--- /dev/null
+++ b/packages/sections/src/variant/EVA/Summary.tsx
@@ -0,0 +1,42 @@
+import { SummaryItem, usePlatformApi } from "ui";
+
+import { definition } from ".";
+import { dataTypesMap } from "../../dataTypes";
+// import EVA_SUMMARY from "./EVASummaryQuery.gql";
+
+function Summary() {
+
+ // !! THIS IS UGLY BUT AVOIDS ADDING TYPES IN dataType FILE FOR NOW
+ type dataTypesMapType = {
+ [index: string]: number;
+ };
+ const dataTypesMapTyped = dataTypesMap as dataTypesMapType;
+
+ // !! USE PLACEHOLDER REQUEST FOR NOW !!
+ // const request = usePlatformApi(EVA_SUMMARY);
+ const request = {
+ loading: false,
+ error: undefined,
+ data: true, // data is not actually used by summary - only cares if there is data
+ };
+
+ return (
+ {}} // !! renderSummary PROP NOT USED ANYMORE ANYWAY?
+ // renderSummary={({ evaSummary }) => {
+ // const { count } = evaSummary;
+ // return `${count} ${count === 1 ? "entry" : "entries"}`;
+ // }}
+ subText={dataTypesMapTyped.genetic_association}
+ />
+ );
+}
+
+// !!!!!!!!!!!
+// Summary.fragments = {
+// evaSummary: EVA_SUMMARY,
+// };
+
+export default Summary;
\ No newline at end of file
diff --git a/packages/sections/src/variant/EVA/index.ts b/packages/sections/src/variant/EVA/index.ts
new file mode 100644
index 000000000..2e223cb27
--- /dev/null
+++ b/packages/sections/src/variant/EVA/index.ts
@@ -0,0 +1,16 @@
+
+// !!!!!!!!!!
+// ADD POSSIBILITY FOR PRIVATE SECTIONS IN PARTNER PAGE
+// !!!!!!!!!!
+// import { isPrivateVariantSection } from "../../utils/partnerPreviewUtils";
+
+// !! NEED TO TYPE WHATEVER PASSED INTO HASDATA - SEE SUMMARY
+const id = "eva";
+export const definition = {
+ id,
+ name: "ClinVar",
+ shortName: "CV",
+ hasData: () => true, // !! CHANGE WHEN USE GQL !!
+ // hasData: ({ eva }) => eva.count > 0,
+ isPrivate: false, // isPrivateVariantSection(id),
+};
diff --git a/packages/sections/src/variant/InSilicoPredictors/Body.tsx b/packages/sections/src/variant/InSilicoPredictors/Body.tsx
new file mode 100644
index 000000000..a618f622a
--- /dev/null
+++ b/packages/sections/src/variant/InSilicoPredictors/Body.tsx
@@ -0,0 +1,135 @@
+// import { useQuery } from "@apollo/client";
+import { Typography } from "@mui/material";
+import { Link, SectionItem, Tooltip, PublicationsDrawer, DataTable } from "ui";
+import { definition } from "../InSilicoPredictors";
+import Description from "../InSilicoPredictors/Description";
+import { epmcUrl } from "../../utils/urls";
+import { identifiersOrgLink } from "../../utils/global";
+import { defaultRowsPerPageOptions, naLabel, sectionsBaseSizeQuery,
+} from "../../constants";
+// import UNIPROT_VARIANTS_QUERY from "./UniprotVariantsQuery.gql";
+
+function getColumns(label: string) {
+ return [
+ {
+ id: "method",
+ label: "Method",
+ },
+ {
+ id: "assessment",
+ label: "Prediction",
+ renderCell: ({ assessment, flag }) => (
+ flag
+ ? (
+
+
+ Flag: {flag}
+
+ >
+ }
+ showHelpIcon
+ >
+ {assessment ?? naLabel}
+
+ ) : (
+ assessment ?? naLabel
+ )
+ )
+ },
+ {
+ id: "score",
+ label: "Score",
+ },
+ ];
+}
+
+type BodyProps = {
+ id: string,
+ label: string,
+ entity: string,
+};
+
+
+export function Body({ id, label, entity }) {
+
+ // const variables = {
+ // ensemblId: ensgId,
+ // efoId,
+ // size: sectionsBaseSizeQuery,
+ // };
+
+ const columns = getColumns(label);
+
+ // const request = useQuery(UNIPROT_VARIANTS_QUERY, {
+ // variables,
+ // });
+ const request = mockQuery();
+
+ return (
+ }
+ renderBody={() => {
+ // const rows = request.data.variant.inSilicoPredictors;
+ const rows =
+ [...request.data.variant.inSilicoPredictors].sort((row1, row2) => {
+ return row1.method.localeCompare(row2.method);
+ });
+ return (
+
+ );
+ }}
+ />
+ );
+}
+
+export default Body;
+
+function mockQuery() {
+ return {
+ loading: false,
+ error: undefined,
+ data: JSON.parse(`
+{
+ "variant": {
+ "inSilicoPredictors": [
+ {
+ "method": "alphaMissense",
+ "score": 0.077,
+ "assessment": "likely_benign"
+ },
+ {
+ "method": "phred scaled CADD",
+ "score": 7.293
+ },
+ {
+ "method": "sift max",
+ "score": 0.2,
+ "assessment": "MODERATE"
+ },
+ {
+ "method": "polyphen max",
+ "score": 0.069,
+ "assessment": "tolerated"
+ },
+ {
+ "method": "loftee",
+ "assessment": "high-confidence LoF variant",
+ "flag": "PHYLOCSF_WEAK"
+ }
+ ]
+ }
+}`),
+ };
+}
diff --git a/packages/sections/src/variant/InSilicoPredictors/Description.tsx b/packages/sections/src/variant/InSilicoPredictors/Description.tsx
new file mode 100644
index 000000000..7125d6ea3
--- /dev/null
+++ b/packages/sections/src/variant/InSilicoPredictors/Description.tsx
@@ -0,0 +1,18 @@
+import { Link } from "ui";
+
+type DescriptionProps = {
+ variantId: string;
+};
+
+function Description({ variantId }: DescriptionProps) {
+ return (
+ <>
+ Predicted functional effect of {variantId}. {" "}Source:{" "}
+
+ VEP
+
+ >
+ );
+}
+
+export default Description;
\ No newline at end of file
diff --git a/packages/sections/src/variant/InSilicoPredictors/Summary.tsx b/packages/sections/src/variant/InSilicoPredictors/Summary.tsx
new file mode 100644
index 000000000..fd8d58567
--- /dev/null
+++ b/packages/sections/src/variant/InSilicoPredictors/Summary.tsx
@@ -0,0 +1,42 @@
+import { SummaryItem, usePlatformApi } from "ui";
+
+import { definition } from ".";
+import { dataTypesMap } from "../../dataTypes";
+// import UNIPROT_VARIANTS_SUMMARY from "./UniprotVariantsSummaryQuery.gql";
+
+function Summary() {
+
+ // !! THIS IS UGLY BUT AVOIDS ADDING TYPES IN dataType FILE FOR NOW
+ type dataTypesMapType = {
+ [index: string]: number;
+ };
+ const dataTypesMapTyped = dataTypesMap as dataTypesMapType;
+
+ // !! USE PLACEHOLDER REQUEST FOR NOW !!
+ // const request = usePlatformApi(UNIPROT_VARIANTS_SUMMARY);
+ const request = {
+ loading: false,
+ error: undefined,
+ data: true, // data is not actually used by summary - only cares if there is data
+ };
+
+ return (
+ {}} // !! renderSummary PROP NOT USED ANYMORE ANYWAY?
+ // renderSummary={({ uniprotVariantsSummary }) => {
+ // const { count } = uniprotVariantsSummary;
+ // return `${count} ${count === 1 ? "entry" : "entries"}`;
+ // }}
+ subText={dataTypesMapTyped.genetic_association} // !! LEAVE AS GENETIC ASSOCITION FOR NOW
+ />
+ );
+}
+
+// !!!!!!!!!!!!!
+// Summary.fragments = {
+// UniprotVariantsSummary: UNIPROT_VARIANTS_SUMMARY,
+// };
+
+export default Summary;
diff --git a/packages/sections/src/variant/InSilicoPredictors/index.ts b/packages/sections/src/variant/InSilicoPredictors/index.ts
new file mode 100644
index 000000000..2b681c2fd
--- /dev/null
+++ b/packages/sections/src/variant/InSilicoPredictors/index.ts
@@ -0,0 +1,11 @@
+// import { isPrivateEvidenceSection } from "../../utils/partnerPreviewUtils";
+
+const id = "in_silico_predictors";
+export const definition = {
+ id,
+ name: "In silico predictors",
+ shortName: "VP",
+ // UPDATE HERE ONCE HAVE PROPER DATA
+ hasData: data => true, // data.uniprotVariantsSummary.count > 0,
+ isPrivate: false, // isPrivateEvidenceSection(id),
+};
diff --git a/packages/sections/src/variant/UniProtVariants/Body.tsx b/packages/sections/src/variant/UniProtVariants/Body.tsx
new file mode 100644
index 000000000..103e99baf
--- /dev/null
+++ b/packages/sections/src/variant/UniProtVariants/Body.tsx
@@ -0,0 +1,289 @@
+// import { useQuery } from "@apollo/client";
+import { Typography } from "@mui/material";
+import { Link, SectionItem, Tooltip, PublicationsDrawer, DataTable } from "ui";
+import { definition } from "../../variant/UniProtVariants";
+import Description from "../../variant/UniProtVariants/Description";
+import { epmcUrl } from "../../utils/urls";
+import { identifiersOrgLink } from "../../utils/global";
+import { defaultRowsPerPageOptions, sectionsBaseSizeQuery,
+} from "../../constants";
+// import UNIPROT_VARIANTS_QUERY from "./UniprotVariantsQuery.gql";
+
+function getColumns(label: string) {
+ return [
+ {
+ id: "targetFromSourceId",
+ label: "Reported protein",
+ renderCell: ({ targetFromSourceId }) => (
+
+ {targetFromSourceId}
+
+ ),
+ },
+ {
+ id: "disease.name",
+ label: "Disease/phenotype",
+ renderCell: ({
+ "disease.id": disease_id,
+ "disease.name": disease_name,
+ diseaseFromSource
+ }) => (
+
+
+ Reported disease or phenotype:
+
+
+ {diseaseFromSource}
+
+ >
+ }
+ showHelpIcon
+ >
+ {disease_name}
+
+ ),
+ },
+ {
+ id: "confidence",
+ label: "Confidence",
+ },
+ {
+ label: "Literature",
+ renderCell: ({ literature }) => {
+ const literatureList =
+ literature?.reduce((acc, id) => {
+ if (id !== "NA") {
+ acc.push({
+ name: id,
+ url: epmcUrl(id),
+ group: "literature",
+ });
+ }
+ return acc;
+ }, []) || [];
+
+ return (
+
+ );
+ },
+ },
+ ];
+}
+
+type BodyProps = {
+ id: string,
+ label: string,
+ entity: string,
+};
+
+
+export function Body({ id, label, entity }) {
+
+ // ID IS JUST THE VARIANT ID STRING FOR NOW
+ // const { ensgId, efoId } = id;
+
+ // const variables = {
+ // ensemblId: ensgId,
+ // efoId,
+ // size: sectionsBaseSizeQuery,
+ // };
+
+ const columns = getColumns(label);
+
+ // const request = useQuery(UNIPROT_VARIANTS_QUERY, {
+ // variables,
+ // });
+ const request = mockQuery();
+
+ return (
+ }
+ renderBody={({ disease }) => {
+ // const { rows } = disease.uniprotVariantsSummary;
+ const rows = request.data.variant.uniProtVariants;
+ return (
+
+ );
+ }}
+ />
+ );
+}
+
+export default Body;
+
+function mockQuery() {
+ return {
+ loading: false,
+ error: undefined,
+ data: JSON.parse(`
+{
+ "variant": {
+ "uniProtVariants": [
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4A",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "Orphanet_726",
+ "disease.name": "Alpers syndrome"
+ },
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Mitochondrial DNA depletion syndrome 4A",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "MONDO_0008758",
+ "disease.name": "mitochondrial DNA depletion syndrome 4a"
+ },
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Sensory ataxic neuropathy dysarthria and ophthalmoparesis",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis"
+ },
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Spinocerebellar ataxia with epilepsy",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis"
+ },
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Sensory ataxic neuropathy dysarthria and ophthalmoparesis",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "Orphanet_70595",
+ "disease.name": "Sensory ataxic neuropathy - dysarthria - ophthalmoparesis"
+ },
+ {
+ "variantId": "15_89327201_C_T",
+ "confidence": "high",
+ "diseaseFromSource": "Spinocerebellar ataxia with epilepsy",
+ "literature": [
+ "16639411",
+ "15917273",
+ "15477547",
+ "14635118",
+ "15824347",
+ "11431686",
+ "15122711",
+ "26942291",
+ "12565911",
+ "18828154",
+ "14694057",
+ "15689359",
+ "12707443"
+ ],
+ "targetFromSourceId": "P54098",
+ "target.id": "ENSG00000140521",
+ "target.approvedSymbol": "POLG",
+ "disease.id": "MONDO_0011835",
+ "disease.name": "sensory ataxic neuropathy, dysarthria, and ophthalmoparesis"
+ }
+ ]
+ }
+}`),
+ };
+}
diff --git a/packages/sections/src/variant/UniProtVariants/Description.tsx b/packages/sections/src/variant/UniProtVariants/Description.tsx
new file mode 100644
index 000000000..5f5ecf471
--- /dev/null
+++ b/packages/sections/src/variant/UniProtVariants/Description.tsx
@@ -0,0 +1,18 @@
+import { Link } from "ui";
+
+type DescriptionProps = {
+ variantId: string;
+};
+
+function Description({ variantId }: DescriptionProps) {
+ return (
+ <>
+ Literature-based curation associating {variantId}{" "} to a disease/phenotype. Source:{" "}
+
+ UniProt
+
+ >
+ );
+}
+
+export default Description;
\ No newline at end of file
diff --git a/packages/sections/src/variant/UniProtVariants/Summary.tsx b/packages/sections/src/variant/UniProtVariants/Summary.tsx
new file mode 100644
index 000000000..ba8a8ed22
--- /dev/null
+++ b/packages/sections/src/variant/UniProtVariants/Summary.tsx
@@ -0,0 +1,42 @@
+import { SummaryItem, usePlatformApi } from "ui";
+
+import { definition } from ".";
+import { dataTypesMap } from "../../dataTypes";
+// import UNIPROT_VARIANTS_SUMMARY from "./UniprotVariantsSummaryQuery.gql";
+
+function Summary() {
+
+ // !! THIS IS UGLY BUT AVOIDS ADDING TYPES IN dataType FILE FOR NOW
+ type dataTypesMapType = {
+ [index: string]: number;
+ };
+ const dataTypesMapTyped = dataTypesMap as dataTypesMapType;
+
+ // !! USE PLACEHOLDER REQUEST FOR NOW !!
+ // const request = usePlatformApi(UNIPROT_VARIANTS_SUMMARY);
+ const request = {
+ loading: false,
+ error: undefined,
+ data: true, // data is not actually used by summary - only cares if there is data
+ };
+
+ return (
+ {}} // !! renderSummary PROP NOT USED ANYMORE ANYWAY?
+ // renderSummary={({ uniprotVariantsSummary }) => {
+ // const { count } = uniprotVariantsSummary;
+ // return `${count} ${count === 1 ? "entry" : "entries"}`;
+ // }}
+ subText={dataTypesMapTyped.genetic_association}
+ />
+ );
+}
+
+// !!!!!!!!!!!!!
+// Summary.fragments = {
+// UniprotVariantsSummary: UNIPROT_VARIANTS_SUMMARY,
+// };
+
+export default Summary;
diff --git a/packages/sections/src/variant/UniProtVariants/index.ts b/packages/sections/src/variant/UniProtVariants/index.ts
new file mode 100644
index 000000000..a653651b0
--- /dev/null
+++ b/packages/sections/src/variant/UniProtVariants/index.ts
@@ -0,0 +1,11 @@
+// import { isPrivateEvidenceSection } from "../../utils/partnerPreviewUtils";
+
+const id = "uniprot_variants";
+export const definition = {
+ id,
+ name: "UniProt variants",
+ shortName: "UV",
+ // !! UPDATE HERE ONCE HAVE PROPER DATA
+ hasData: data => true, // data.uniprotVariantsSummary.count > 0,
+ isPrivate: false, // isPrivateEvidenceSection(id),
+};