diff --git a/add-pkg.sh b/add-pkg.sh index d276dbd..c7fce98 100755 --- a/add-pkg.sh +++ b/add-pkg.sh @@ -38,7 +38,7 @@ else fi docker tag "r-$NAME" "$IMAGE" -docker run "$IMAGE" -e 'write.csv(installed.packages()[, c("Package","Version")], row.names=FALSE, file="/dev/stdout")' 2>/dev/null | sort > packages.csv +docker run -e LC_ALL=C.UTF-8 "$IMAGE" -e 'write.csv(installed.packages()[, c("Package","Version")], row.names=FALSE, file="/dev/stdout")' 2>/dev/null > packages.csv set +x echo "Run this to push:" diff --git a/packages.csv b/packages.csv index dd28e94..c3e3c2b 100644 --- a/packages.csv +++ b/packages.csv @@ -1,52 +1,4 @@ -"BH","1.72.0-3" -"Brobdingnag","1.2-6" -"DBI","1.1.0" -"DT","0.15" -"Epi","2.46" -"FNN","1.1.3" -"Formula","1.2-3" -"GGally","2.0.0" -"Gmisc","2.0.1" -"HDInterval","0.2.2" -"Hmisc","4.4-1" -"KMsurv","0.1-5" -"KernSmooth","2.23-17" -"MASS","7.3-52" -"MatchIt","4.2.0" -"Matrix","1.2-18" -"MatrixModels","0.4-1" -"ModelMetrics","1.2.2.2" -"NHPoisson","3.3" "Package","Version" -"Publish","2020.12.23" -"R.methodsS3","1.8.1" -"R.oo","1.25.0" -"R.utils","2.12.0" -"R6","2.4.1" -"RColorBrewer","1.1-2" -"RConics","1.1.1" -"RCurl","1.98-1.2" -"ROI","1.0-0" -"ROI.plugin.lpsolve","1.0-0" -"RSpectra","0.16-1" -"Rcpp","1.0.5" -"RcppArmadillo","0.9.900.3.0" -"RcppEigen","0.3.3.7.0" -"RcppParallel","5.0.2" -"RcppProgress","0.4.2" -"RcppRoll","0.3.0" -"RcppThread","2.1.3" -"Rdpack","2.1.1" -"SCCS","1.2" -"SQUAREM","2020.5" -"SparseM","1.78" -"StanHeaders","2.21.0-6" -"TH.data","1.1-0" -"UpSetR","1.4.0" -"V8","3.2.0" -"VGAM","1.1-6" -"WeightIt","0.13.1" -"XML","3.99-0.6" "abind","1.4-5" "arrow","4.0.0.1" "ash","1.0-15" @@ -54,12 +6,12 @@ "assertthat","0.2.1" "aweek","1.0.2" "backports","1.4.1" -"base","4.0.2" "base64enc","0.1-3" "bayesm","3.1-4" "bayesplot","1.7.2" "bayestestR","0.8.2" "bdsmatrix","1.3-4" +"BH","1.72.0-3" "binom","1.1-1" "bit","4.0.4" "bit64","4.0.5" @@ -69,13 +21,14 @@ "brglm2","0.7.1" "bridgesampling","1.0-0" "brms","2.13.5" +"Brobdingnag","1.2-6" "broom","0.7.5" "broom.helpers","1.2.1" -"caTools","1.18.2" "callr","3.4.3" "car","3.0-9" "carData","3.0-4" "caret","6.0-86" +"caTools","1.18.2" "cellranger","1.1.0" "checkmate","2.0.0" "class","7.3-17" @@ -91,7 +44,6 @@ "colorspace","1.4-1" "colourpicker","1.0" "commonmark","1.7" -"compiler","4.0.2" "conquer","1.0.2" "consort","1.0.1" "corpcor","1.6.9" @@ -104,17 +56,18 @@ "crosstalk","1.1.0.1" "curl","4.3" "data.table","1.13.0" -"datasets","4.0.2" "date","1.2-39" +"DBI","1.1.0" "dbplyr","1.4.4" -"deSolve","1.28" "desc","1.2.0" +"deSolve","1.28" "detectseparation","0.2" "dfidx","0.0-4" "digest","0.6.25" "distributional","0.2.0" "doParallel","1.0.15" "dplyr","1.0.2" +"DT","0.15" "dtplyr","1.0.1" "dtw","1.23-1" "dtwclust","5.5.10" @@ -124,6 +77,7 @@ "egg","0.4.5" "ellipsis","0.3.1" "enrichwith","0.3.1" +"Epi","2.46" "estimatr","0.30.2" "etm","1.1.1" "evaluate","0.14" @@ -138,6 +92,7 @@ "finalfit","1.0.4" "flexclust","1.4-1" "flexsurv","1.1.1" +"FNN","1.1.3" "fontBitstreamVera","0.1.1" "fontLiberation","0.1.0" "fontquiver","0.2.1" @@ -146,6 +101,7 @@ "foreign","0.8-80" "forestplot","1.10.1" "forestploter","1.0.0" +"Formula","1.2-3" "fs","1.5.0" "furrr","0.1.0" "future","1.18.0" @@ -156,6 +112,7 @@ "getopt","1.20.3" "gets","0.29" "ggalluvial","0.12.3" +"GGally","2.0.0" "ggdist","2.2.0" "ggfortify","0.4.15" "ggh4x","0.2.1" @@ -171,20 +128,20 @@ "glmnet","4.1-4" "globals","0.12.5" "glue","1.4.2" +"Gmisc","2.0.1" "gnm","1.1-1" "gower","0.2.2" -"grDevices","4.0.2" -"graphics","4.0.2" -"grid","4.0.2" "gridExtra","2.3" "gt","0.2.2" "gtable","0.3.0" "gtools","3.8.2" "gtsummary","1.3.7" "haven","2.3.1" +"HDInterval","0.2.2" "hdrcde","3.3" "here","0.1" "highr","0.8" +"Hmisc","4.4-1" "hms","0.5.3" "htmlTable","2.0.1" "htmltools","0.5.0" @@ -206,7 +163,9 @@ "jtools","2.1.2" "kableExtra","1.3.4" "kernlab","0.9-29" +"KernSmooth","2.23-17" "km.ci","0.5-2" +"KMsurv","0.1-5" "knitr","1.29" "ks","1.11.7" "labeling","0.3" @@ -230,13 +189,16 @@ "maptools","1.0-2" "markdown","1.1" "marqLevAlg","2.0.7" +"MASS","7.3-52" +"MatchIt","4.2.0" "mathjaxr","1.6-0" +"Matrix","1.2-18" +"MatrixModels","0.4-1" "matrixStats","0.56.0" "maxstat","0.7-25" "mclust","5.4.7" "metadat","1.2-0" "metafor","3.8-1" -"methods","4.0.2" "mets","1.2.9" "mgcv","1.8-33" "mice","3.11.0" @@ -246,6 +208,7 @@ "mitools","2.4" "mlogit","1.1-1" "mnlogit","1.2.6" +"ModelMetrics","1.2.2.2" "modelr","0.1.8" "modelsummary","0.6.6" "modeltools","0.2-23" @@ -256,6 +219,7 @@ "munsell","0.5.0" "mvtnorm","1.1-1" "naniar","0.6.0" +"NHPoisson","3.3" "nleqslv","3.3.2" "nlme","3.1-149" "nloptr","1.2.2.2" @@ -265,12 +229,10 @@ "openssl","1.4.2" "openxlsx","4.1.5" "optparse","1.6.6" -"pROC","1.16.2" "packrat","0.5.0" "pacman","0.5.1" "pammtools","0.5.8" "pander","0.6.3" -"parallel","4.0.2" "parameters","0.12.0" "parglm","0.1.6" "patchwork","1.1.1" @@ -292,6 +254,7 @@ "praise","1.0.0" "predtools","0.0.2" "prettyunits","1.1.1" +"pROC","1.16.2" "processx","3.4.4" "prodlim","2019.11.13" "progress","1.2.2" @@ -299,10 +262,15 @@ "proxy","0.4-27" "ps","1.3.4" "pseudo","1.4.3" +"Publish","2020.12.23" "purrr","0.3.4" "quadprog","1.5-8" "quantreg","5.61" "qvcalc","1.0.2" +"R.methodsS3","1.8.1" +"R.oo","1.25.0" +"R.utils","2.12.0" +"R6","2.4.1" "rainbow","3.6" "randomForest","4.6-14" "randomForestExplainer","0.10.1" @@ -310,6 +278,17 @@ "ranger","0.13.1" "rappdirs","0.3.1" "rbibutils","2.0" +"RColorBrewer","1.1-2" +"RConics","1.1.1" +"Rcpp","1.0.5" +"RcppArmadillo","0.9.900.3.0" +"RcppEigen","0.3.3.7.0" +"RcppParallel","5.0.2" +"RcppProgress","0.4.2" +"RcppRoll","0.3.0" +"RcppThread","2.1.3" +"RCurl","1.98-1.2" +"Rdpack","2.1.1" "readr","1.3.1" "readxl","1.3.1" "recipes","0.1.15" @@ -330,9 +309,12 @@ "rmarkdown","2.3" "rms","6.2-0" "rngWELL","0.10-7" +"ROI","1.0-0" +"ROI.plugin.lpsolve","1.0-0" "rpart","4.1-15" "rprojroot","1.3-2" "rsconnect","0.8.16" +"RSpectra","0.16-1" "rstan","2.21.2" "rstantools","2.1.1" "rstatix","0.6.0" @@ -341,6 +323,7 @@ "sandwich","2.5-1" "sass","0.3.0" "scales","1.1.1" +"SCCS","1.2" "segmented","1.4-1" "selectr","0.4-2" "sf","0.9-5" @@ -354,23 +337,23 @@ "snakecase","0.11.0" "sourcetools","0.1.7" "sp","1.4-2" -"splines","4.0.2" +"SparseM","1.78" "splines2","0.4.1" +"SQUAREM","2020.5" +"StanHeaders","2.21.0-6" "statmod","1.4.34" -"stats","4.0.2" -"stats4","4.0.2" "stringi","1.4.6" "stringr","1.4.0" -"survMisc","0.5.5" "survey","4.1-1" "survival","3.2-3" "survminer","0.4.8" +"survMisc","0.5.5" "svglite","1.2.3.2" "sys","3.4" "systemfonts","0.3.2" "tables","0.9.6" -"tcltk","4.0.2" "testthat","2.3.2" +"TH.data","1.1-0" "threejs","0.3.3" "tibble","3.0.3" "tictoc","1.0" @@ -380,24 +363,41 @@ "timeDate","3043.102" "timereg","2.0.1" "tinytex","0.25" -"tools","4.0.2" "tsModel","0.6" "units","0.6-7" +"UpSetR","1.4.0" "usethis","2.0.1" "utf8","1.1.4" -"utils","4.0.2" +"V8","3.2.0" "vcd","1.4-9" "vctrs","0.3.4" +"VGAM","1.1-6" "viridis","0.5.1" "viridisLite","0.3.0" "visdat","0.5.3" "webshot","0.5.2" +"WeightIt","0.13.1" "whisker","0.4" "withr","2.4.1" "xfun","0.16" +"XML","3.99-0.6" "xml2","1.3.2" "xtable","1.8-4" "xts","0.12-0" "yaml","2.2.1" "zip","2.1.1" "zoo","1.8-8" +"base","4.0.2" +"compiler","4.0.2" +"datasets","4.0.2" +"graphics","4.0.2" +"grDevices","4.0.2" +"grid","4.0.2" +"methods","4.0.2" +"parallel","4.0.2" +"splines","4.0.2" +"stats","4.0.2" +"stats4","4.0.2" +"tcltk","4.0.2" +"tools","4.0.2" +"utils","4.0.2"