diff --git a/src/workflows/process_datasets/config.vsh.yaml b/src/workflows/process_datasets/config.vsh.yaml index 10d9a36..ed41e20 100644 --- a/src/workflows/process_datasets/config.vsh.yaml +++ b/src/workflows/process_datasets/config.vsh.yaml @@ -26,9 +26,16 @@ resources: path: main.nf entrypoint: run_wf - path: /common/nextflow_helpers/helper.nf +repositories: + - name: openproblems-v2 + type: github + repo: openproblems-bio/openproblems-v2 + tag: main_build dependencies: - name: common/check_dataset_schema + repository: openproblems-v2 - name: common/extract_metadata - - name: predict_modality/process_dataset + repository: openproblems-v2 + - name: data_processors/process_dataset runners: - type: nextflow \ No newline at end of file