diff --git a/src/cell_volume_methods/alpha_shapes/config.vsh.yaml b/src/cell_volume_methods/alpha_shapes/config.vsh.yaml index 47d5ceab..f71bceac 100644 --- a/src/cell_volume_methods/alpha_shapes/config.vsh.yaml +++ b/src/cell_volume_methods/alpha_shapes/config.vsh.yaml @@ -14,7 +14,7 @@ arguments: - name: --output required: true direction: output - __merge__: /src/api/file_spatialdata_assigned.yaml + __merge__: /src/api/file_cell_volumes.yaml resources: - type: python_script diff --git a/src/normalisation_methods/normalise_by_volume/config.vsh.yaml b/src/normalisation_methods/normalise_by_volume/config.vsh.yaml index d7000b18..9f9e1906 100644 --- a/src/normalisation_methods/normalise_by_volume/config.vsh.yaml +++ b/src/normalisation_methods/normalise_by_volume/config.vsh.yaml @@ -10,6 +10,7 @@ arguments: type: file description: H5ad with an obs column of cell volumes calculated from spatial transcriptomics data. required: true + __merge__: /src/api/file_cell_volumes.yaml - name: --output required: true direction: output