diff --git a/_viash.yaml b/_viash.yaml index 218e5a1..3a3b5ff 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -71,6 +71,12 @@ authors: github: KaiWaldrant orcid: "0009-0003-8555-1361" +repositories: + - name: openproblems + type: github + repo: openproblems-bio/openproblems + tag: build/main + viash_version: 0.9.0 config_mods: | diff --git a/src/workflows/process_datasets/config.vsh.yaml b/src/workflows/process_datasets/config.vsh.yaml index 0e4004d..3d283dd 100644 --- a/src/workflows/process_datasets/config.vsh.yaml +++ b/src/workflows/process_datasets/config.vsh.yaml @@ -24,10 +24,7 @@ resources: - path: /common/nextflow_helpers/helper.nf dependencies: - name: common/check_dataset_schema - repository: - type: github - repo: openproblems-bio/openproblems - tag: build/main + repository: openproblems - name: data_processors/process_dataset runners: - type: nextflow diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml index 234bbe8..1d408ee 100644 --- a/src/workflows/run_benchmark/config.vsh.yaml +++ b/src/workflows/run_benchmark/config.vsh.yaml @@ -64,10 +64,5 @@ dependencies: - name: methods/magic - name: metrics/mse - name: metrics/poisson -repositories: - - name: openproblems - type: github - repo: openproblems-bio/openproblems - tag: build/main runners: - type: nextflow