diff --git a/src/control_methods/no_denoising/config.vsh.yaml b/src/control_methods/no_denoising/config.vsh.yaml index 49e6947..dcfd530 100644 --- a/src/control_methods/no_denoising/config.vsh.yaml +++ b/src/control_methods/no_denoising/config.vsh.yaml @@ -19,6 +19,7 @@ engines: image: ghcr.io/openproblems-bio/base_python:1.0.4 runners: + - type: executable - type: nextflow directives: label: [midtime, midmem, midcpu] diff --git a/src/control_methods/perfect_denoising/config.vsh.yaml b/src/control_methods/perfect_denoising/config.vsh.yaml index e328a9a..ea4def4 100644 --- a/src/control_methods/perfect_denoising/config.vsh.yaml +++ b/src/control_methods/perfect_denoising/config.vsh.yaml @@ -20,6 +20,7 @@ engines: image: ghcr.io/openproblems-bio/base_python:1.0.4 runners: + - type: executable - type: nextflow directives: label: [midtime, midmem, midcpu] diff --git a/src/methods/alra/config.vsh.yaml b/src/methods/alra/config.vsh.yaml index a549aab..0113796 100644 --- a/src/methods/alra/config.vsh.yaml +++ b/src/methods/alra/config.vsh.yaml @@ -39,6 +39,7 @@ engines: cran: [ Matrix, rsvd ] github: KlugerLab/ALRA runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, highcpu] diff --git a/src/methods/dca/config.vsh.yaml b/src/methods/dca/config.vsh.yaml index efb2eb5..3d62968 100644 --- a/src/methods/dca/config.vsh.yaml +++ b/src/methods/dca/config.vsh.yaml @@ -40,6 +40,7 @@ engines: - jsonschema - "git+https://github.com/scottgigante-immunai/dca.git@patch-1" runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, highcpu] diff --git a/src/methods/knn_smoothing/config.vsh.yaml b/src/methods/knn_smoothing/config.vsh.yaml index ee9852e..d0b1ade 100644 --- a/src/methods/knn_smoothing/config.vsh.yaml +++ b/src/methods/knn_smoothing/config.vsh.yaml @@ -38,6 +38,7 @@ engines: github: - scottgigante-immunai/knn-smoothing@python_package runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, highcpu] diff --git a/src/methods/magic/config.vsh.yaml b/src/methods/magic/config.vsh.yaml index 5edd540..e1760a1 100644 --- a/src/methods/magic/config.vsh.yaml +++ b/src/methods/magic/config.vsh.yaml @@ -58,6 +58,7 @@ engines: - type: python pip: [scprep, magic-impute, scipy, scikit-learn<1.2] runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, highcpu] diff --git a/src/methods/saver/config.vsh.yaml b/src/methods/saver/config.vsh.yaml index eb5755d..44a6841 100644 --- a/src/methods/saver/config.vsh.yaml +++ b/src/methods/saver/config.vsh.yaml @@ -28,6 +28,7 @@ engines: - type: r github: mohuangx/SAVER runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, highcpu] diff --git a/src/metrics/mse/config.vsh.yaml b/src/metrics/mse/config.vsh.yaml index d21e138..2dd3ef9 100644 --- a/src/metrics/mse/config.vsh.yaml +++ b/src/metrics/mse/config.vsh.yaml @@ -25,6 +25,7 @@ engines: - scikit-learn - scprep runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, midcpu] diff --git a/src/metrics/poisson/config.vsh.yaml b/src/metrics/poisson/config.vsh.yaml index 4577e51..f36054d 100644 --- a/src/metrics/poisson/config.vsh.yaml +++ b/src/metrics/poisson/config.vsh.yaml @@ -23,6 +23,7 @@ engines: - type: python pip: scprep runners: + - type: executable - type: nextflow directives: label: [midtime, highmem, midcpu] \ No newline at end of file diff --git a/src/process_dataset/config.vsh.yaml b/src/process_dataset/config.vsh.yaml index 915a7fc..4a2f111 100644 --- a/src/process_dataset/config.vsh.yaml +++ b/src/process_dataset/config.vsh.yaml @@ -32,6 +32,7 @@ engines: - numpy - scipy runners: + - type: executable - type: nextflow directives: label: [highmem, midcpu , midtime]