From 282f0b389216bfb0c36dd51798b3a0f88ff6e1e0 Mon Sep 17 00:00:00 2001
From: Kai Waldrant <kai@data-intuitive.com>
Date: Tue, 19 Mar 2024 10:16:28 +0100
Subject: [PATCH] fix shared mem config (#409)

* fix shared mem config

* docker test

* update docker test

* update docker test

* fix docker test

* undo docker test
---
 src/wf_utils/labels_tw.config | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/wf_utils/labels_tw.config b/src/wf_utils/labels_tw.config
index 2af089636a..6e19a98ee4 100644
--- a/src/wf_utils/labels_tw.config
+++ b/src/wf_utils/labels_tw.config
@@ -26,13 +26,13 @@ process {
     disk = { 200.GB * task.attempt } 
   }
   withLabel: lowsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.05}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.05)}" : ""}
   }
   withLabel: midsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.1}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.1)}" : ""}
   }
   withLabel: highsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.25}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.25)}" : ""}
   }
 }