make build failing locally in scripts/build_10_cmaq.sh

[aethr]

Describe the bug

make build
docker build --platform=linux/amd64 . -t cmaq
[+] Building 128.2s (25/30)                                                                              docker:default
 => [internal] load build definition from Dockerfile                                                               0.0s
 => => transferring dockerfile: 1.98kB                                                                             0.0s
 => [internal] load metadata for docker.io/library/debian:bookworm                                                 3.1s
 => [internal] load metadata for docker.io/continuumio/miniconda3:latest                                           3.1s
 => [internal] load .dockerignore                                                                                  0.0s
 => => transferring context: 137B                                                                                  0.0s
 => [build  1/15] FROM docker.io/library/debian:bookworm@sha256:b8084b1a576c5504a031936e1132574f4ce1d6cc7130bbcc2  9.1s
 => => resolve docker.io/library/debian:bookworm@sha256:b8084b1a576c5504a031936e1132574f4ce1d6cc7130bbcc25a28f074  0.1s
 => => sha256:b8084b1a576c5504a031936e1132574f4ce1d6cc7130bbcc25a28f074539ae6b 1.85kB / 1.85kB                     0.0s
 => => sha256:3521cd844df5a6f3fd71217af1fc8222db5a7138a753eef86a0550d153184cdf 529B / 529B                         0.0s
 => => sha256:4fd3f4b75df372cc4fd60fd5c133c666cf4738ca0973523513f564076395f8ad 1.46kB / 1.46kB                     0.0s
 => => sha256:8cd46d290033f265db57fd808ac81c444ec5a5b3f189c3d6d85043b647336913 49.56MB / 49.56MB                   8.1s
 => => extracting sha256:8cd46d290033f265db57fd808ac81c444ec5a5b3f189c3d6d85043b647336913                          0.7s
 => [conda 1/6] FROM docker.io/continuumio/miniconda3:latest@sha256:f37f8c7db26ae7ec0098df530e96c9cde139026b9faf  12.0s
 => => resolve docker.io/continuumio/miniconda3:latest@sha256:f37f8c7db26ae7ec0098df530e96c9cde139026b9faf3914800  0.1s
 => => sha256:f37f8c7db26ae7ec0098df530e96c9cde139026b9faf3914800d1522c47a49b1 2.36kB / 2.36kB                     0.0s
 => => sha256:8af1ccdb88921bfd27520cbc95e6e9704262cdecd2c29e07207f6dbd4b7b1fe8 869B / 869B                         0.0s
 => => sha256:bc5fd68e27d5c85c75feeddb1fb5ad507147130f415e22c0ef93973e6beb5538 5.61kB / 5.61kB                     0.0s
 => => sha256:e4fff0779e6ddd22366469f08626c3ab1884b5cbe1719b26da238c95f247b305 29.13MB / 29.13MB                   2.2s
 => => sha256:d516a839cc3b63275abb42a1ec51b5b2a9c73e3d49bd510350c5ea64ea1a70c6 62.31MB / 62.31MB                   5.0s
 => => sha256:a50daf0f0f23c311c9be2efd228ce38fb6d357e1e57d3d1ee20313a1df6a5778 155.84MB / 155.84MB                 9.5s
 => => extracting sha256:e4fff0779e6ddd22366469f08626c3ab1884b5cbe1719b26da238c95f247b305                          0.5s
 => => extracting sha256:d516a839cc3b63275abb42a1ec51b5b2a9c73e3d49bd510350c5ea64ea1a70c6                          0.9s
 => => extracting sha256:a50daf0f0f23c311c9be2efd228ce38fb6d357e1e57d3d1ee20313a1df6a5778                          2.2s
 => [internal] load build context                                                                                  0.2s
 => => transferring context: 37.19MB                                                                               0.2s
 => [runtime 2/5] WORKDIR /opt/cmaq                                                                                0.3s
 => [build  2/15] RUN apt-get update &&     apt-get install -y build-essential m4 csh wget &&     rm -rf /var/li  38.8s
 => [conda 2/6] COPY environment.yml /opt/environment.yml                                                          0.2s
 => [conda 3/6] RUN conda env create -f /opt/environment.yml                                                      32.9s
 => [conda 4/6] RUN conda install -c conda-forge conda-pack                                                       26.5s
 => [build  3/15] WORKDIR /opt/cmaq                                                                                0.1s
 => [conda 5/6] RUN conda-pack -n cmaq -o /tmp/env.tar &&   mkdir /opt/venv && cd /opt/venv && tar xf /tmp/env.ta  3.1s
 => [conda 6/6] RUN /opt/venv/bin/conda-unpack                                                                     3.3s
 => [runtime 3/5] COPY --from=conda /opt/venv /opt/venv                                                            1.2s
 => [build  4/15] COPY --from=conda /opt/venv /opt/venv                                                            1.1s
 => [build  5/15] COPY templates/ioapi /opt/cmaq/templates/ioapi                                                   0.1s
 => [build  6/15] COPY scripts/common.sh /opt/cmaq/scripts/common.sh                                               0.1s
 => [build  7/15] COPY scripts/build_00_ioapi.sh /opt/cmaq/scripts/build_00_ioapi.sh                               0.1s
 => [build  8/15] RUN bash /opt/cmaq/scripts/build_00_ioapi.sh                                                    43.8s
 => [build  9/15] COPY templates/cmaq /opt/cmaq/templates/cmaq                                                     0.1s
 => [build 10/15] COPY src/CMAQv5.0.2_notpollen /opt/cmaq/CMAQv5.0.2_notpollen                                     0.1s
 => [build 11/15] COPY scripts/build_10_cmaq.sh /opt/cmaq/scripts/build_10_cmaq.sh                                 0.1s
 => ERROR [build 12/15] RUN bash /opt/cmaq/scripts/build_10_cmaq.sh                                                0.3s
------
 > [build 12/15] RUN bash /opt/cmaq/scripts/build_10_cmaq.sh:
0.211 + set -e
0.211 + source /opt/cmaq/scripts/common.sh
0.211 +++ uname -m
0.212 ++ ARCH=x86_64
0.212 +++ /bin/uname -s
0.213 +++ /bin/uname -r
0.213 +++ cut -d. -f1
0.214 ++ BLD_OS=Linux6
0.214 ++ export ARCH
0.214 ++ export BLD_OS
0.214 ++ export BIN=Linux6_x86_64gfort
0.214 ++ BIN=Linux6_x86_64gfort
0.214 ++ export BASEDIR=/opt/cmaq
0.214 ++ BASEDIR=/opt/cmaq
0.214 ++ export CPLMODE=nocpl
0.214 ++ CPLMODE=nocpl
0.214 ++ export LD_LIBRARY_PATH=/opt/venv/lib:/opt/venv/bin:
0.214 ++ LD_LIBRARY_PATH=/opt/venv/lib:/opt/venv/bin:
0.214 ++ export PATH=/opt/venv/bin:/opt/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
0.214 ++ PATH=/opt/venv/bin:/opt/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
0.214 + ROOT=/opt/cmaq
0.214 + cmaq_dirname=CMAQv5.0.2_notpollen
0.214 + pushd CMAQv5.0.2_notpollen
0.214 + mkdir -p /opt/cmaq/CMAQv5.0.2_notpollen/lib/x86_64/gcc/
0.214 /opt/cmaq/CMAQv5.0.2_notpollen /opt/cmaq
0.216 + ln -s /opt/cmaq/ioapi-3.1 /opt/cmaq/CMAQv5.0.2_notpollen/lib/ioapi-3.1
0.217 + ln -s /opt/venv /opt/cmaq/CMAQv5.0.2_notpollen/lib/mpich
0.217 + pushd scripts
0.217 /opt/cmaq/scripts/build_10_cmaq.sh: line 20: pushd: scripts: No such file or directory
------
Dockerfile:44
--------------------
  42 |     COPY src/CMAQv5.0.2_notpollen /opt/cmaq/CMAQv5.0.2_notpollen
  43 |     COPY scripts/build_10_cmaq.sh /opt/cmaq/scripts/build_10_cmaq.sh
  44 | >>> RUN bash /opt/cmaq/scripts/build_10_cmaq.sh
  45 |
  46 |     # Build the CMAQ adjoint
--------------------
ERROR: failed to solve: process "/bin/sh -c bash /opt/cmaq/scripts/build_10_cmaq.sh" did not complete successfully: exit code: 1
make: *** [Makefile:3: build] Error 1

The build appears to be succesful when run inside GHA: https://github.com/openmethane/docker-cmaq/actions/runs/10896647022/job/30236779887

The output contains many visible errors, but does appear to exit successfully and a container is uploaded to GHCR.

Expected behavior

Running make build succeeds with the same outcome as running in GHA.

Screenshots

System

• OS: Linux 6.8.0-44-generic #44-Ubuntu x86_64
• Docker: Docker version 26.1.3, build b72abbb

Additional context