[PRE REVIEW]: GraphBin-Tk: assembly graph-based metagenomic binning toolkit

[editorialbot]

Submitting author: @Vini2 (Vijini Mallawaarachchi)
Repository: https://github.com/metagentools/gbintk
Branch with paper.md (empty if default branch): JOSS
Version: v1.0.0
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.07 s (832.8 files/s, 153218.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
CSV                              8              0              0           3195
Python                          14            690            310           2312
SVG                              3              0             23           1500
Markdown                        22            437              0           1095
TeX                              1             25              0            385
YAML                             7             29             56            188
TOML                             1              4              1             53
-------------------------------------------------------------------------------
SUM:                            56           1185            390           8728
-------------------------------------------------------------------------------

Commit count by author:

   209	Vijini Mallawaarachchi
     5	Yapeng Lang
     3	Robert McArthur
     2	GavinHuttley
     1	Anuradha Wickramarachchi
     1	KatherineCaley

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1186/1471-2164-14-600 is OK
- 10.1038/s41592-020-00971-x is OK
- 10.1093/bioinformatics/btv033 is OK
- 10.1093/bioinformatics/btaa180 is OK
- 10.4230/LIPIcs.WABI.2020.8 is OK
- 10.1186/s13015-021-00185-6 is OK
- 10.1007/978-3-031-04749-7_5 is OK
- 10.1089/cmb.2022.0262 is OK
- 10.1093/bib/bbae372 is OK
- 10.1093/gigascience/giy069 is OK
- 10.1101/gr.213959.116 is OK
- 10.3389/fmicb.2023.963173 is OK
- 10.21105/joss.06235 is OK
- 10.1038/s41592-018-0046-7 is OK
- 10.1038/nmeth.3103 is OK
- 10.1093/bioinformatics/btv638 is OK
- 10.7717/peerj.7359 is OK
- 10.1093/bioinformatics/btad209 is OK
- 10.1609/aaai.v36i4.20388 is OK
- 10.1038/s41467-017-02018-w is OK
- 10.1038/s41467-024-50276-2 is OK
- 10.1016/j.compbiolchem.2022.107734 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Encoding Unitig-level Assembly Graphs with Heterop...
- No DOI given, and none found for title: WWOOD/coverm: Read coverage calculator for metagen...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1939

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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[Vini2]

Suggestions for potential reviewers.

• vinisalazar
• telatin
• cumbof
• KatyBrown
• aboffin

[Kevin-Mattheus-Moerman]

@Vini2 thanks for this submission. I am the AEiC on this track and here to help process the initial steps. I will now be looking for a handling editor.

[Kevin-Mattheus-Moerman]

@Vini2 since all editors in this domain are currently busy handling other submission, I've waitlisted this submission for now. We hope to assign an editor as soon as one becomes available. Thanks for your patience.

[Kevin-Mattheus-Moerman]

@Vini2 a quick update. We are still waiting for some editors in this domain to become available (in addition we will soon recruit a cohort of new editors). Apologies again for the delay. We will assign and editor as soon as possible.

[Kevin-Mattheus-Moerman]

@editorialbot invite @marcosvital as editor

[editorialbot]

Invitation to edit this submission sent!

[Kevin-Mattheus-Moerman]

@marcosvital 👋 do you think you can help edit this one?

[Vini2]

Hi @Kevin-Mattheus-Moerman Thanks for the update! No worries.

[Kevin-Mattheus-Moerman]

@editorialbot invite @marcosvital as editor

[editorialbot]

Invitation to edit this submission sent!