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[PRE REVIEW]: tempodisco: an R package for temporal discounting #7170

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editorialbot opened this issue Sep 3, 2024 · 47 comments
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[PRE REVIEW]: tempodisco: an R package for temporal discounting #7170

editorialbot opened this issue Sep 3, 2024 · 47 comments
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CSS JavaScript pre-review R Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning

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editorialbot commented Sep 3, 2024

Submitting author: @kinleyid (Isaac Kinley)
Repository: https://github.com/kinleyid/tempodisco/
Branch with paper.md (empty if default branch):
Version: v0.1.0
Editor: @skanwal
Reviewers: @bkrayfield, @marberts
Managing EiC: Chris Vernon

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/64e0b475f3e3c0a1b6ac7cdd907f9e63"><img src="https://joss.theoj.org/papers/64e0b475f3e3c0a1b6ac7cdd907f9e63/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/64e0b475f3e3c0a1b6ac7cdd907f9e63/status.svg)](https://joss.theoj.org/papers/64e0b475f3e3c0a1b6ac7cdd907f9e63)

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Thanks for submitting your paper to JOSS @kinleyid. Currently, there isn't a JOSS editor assigned to your paper.

@kinleyid if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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@editorialbot editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Sep 3, 2024
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.06 s (826.3 files/s, 307283.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JavaScript                      11           2546           2638           9642
R                               15            261            624           1285
Rmd                              8            118            284            198
Markdown                         2             40              0            107
YAML                             3             22              9            106
CSS                              8             29             41            104
TeX                              1              8              0             84
Sass                             1              4              0             71
-------------------------------------------------------------------------------
SUM:                            49           3028           3596          11597
-------------------------------------------------------------------------------

Commit count by author:

    74	Isaac Kinley

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Paper file info:

📄 Wordcount for paper.md is 375

✅ The paper includes a Statement of need section

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License info:

🔴 Failed to discover a valid open source license

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: An algorithm for identifying nonsystematic delay-d...
- No DOI given, and none found for title: R^2 should not be used to describe behavioral-econ...

❌ MISSING DOIs

- 10.1037//0096-3445.128.1.78 may be a valid DOI for title: Heroin addicts have higher discount rates for dela...
- 10.3758/bf03195548 may be a valid DOI for title: Using logistic regression to estimate delay-discou...
- 10.1002/jeab.128 may be a valid DOI for title: Accurate characterization of delay discounting: A ...
- 10.1901/jeab.2001.76-235 may be a valid DOI for title: Area under the curve as a measure of discounting
- 10.1016/j.drugalcdep.2007.12.011 may be a valid DOI for title: Turning k on its head: Comments on use of an ED50 ...
- 10.3791/53584-v may be a valid DOI for title: Measuring delay discounting in humans using an adj...
- 10.1017/s0033291721002282 may be a valid DOI for title: The problems with delay discounting: A critical re...

❌ INVALID DOIs

- None

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⚠️ An error happened when generating the pdf. Problem with ORCID (0000-0000-0000-0000) for Isaac Kinley. Invalid ORCID.

@kinleyid
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kinleyid commented Sep 3, 2024

@editorialbot commands

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Hello @kinleyid, here are the things you can ask me to do:


# List all available commands
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# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers

@kinleyid
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kinleyid commented Sep 3, 2024

@editorialbot check repository

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.06 s (862.0 files/s, 324540.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JavaScript                      11           2546           2638           9642
R                               15            261            624           1285
Markdown                         3            150              0            592
Rmd                              8            118            284            198
YAML                             3             22              9            106
CSS                              8             29             41            104
TeX                              1              8              0             93
Sass                             1              4              0             71
-------------------------------------------------------------------------------
SUM:                            50           3138           3596          12091
-------------------------------------------------------------------------------

Commit count by author:

    76	Isaac Kinley

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Paper file info:

📄 Wordcount for paper.md is 369

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

@kinleyid
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kinleyid commented Sep 3, 2024

@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

BCEA: An R Package for Cost-Effectiveness Analysis
Submitting author: @n8thangreen
Handling editor: @ajstewartlang (Active)
Reviewers: @rowlandseymour, @MikeLydeamore
Similarity score: 0.6941

The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science
Submitting author: @DominiqueMakowski
Handling editor: @leeper (Retired)
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Reviewers: @smasongarrison, @Wenchao-Ma, @seandamiandevine
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TDLM: An R package for a systematic comparison of trip distribution laws and models
Submitting author: @maximelenormand
Handling editor: @crvernon (Active)
Reviewers: @kanishkan91, @MAnalytics
Similarity score: 0.6676

PupillometryR: An R package for preparing and analysing pupillometry data
Submitting author: @samhforbes
Handling editor: @oliviaguest (Active)
Reviewers: @paulinepalma, @Athanasiamo
Similarity score: 0.6666

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@kinleyid
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kinleyid commented Sep 3, 2024

Hello, I'd like to add something I forgot to mention in the submission note---in addition to being under review, the paper that used an early version of this software also exists as a preprint that contains a link to said early version: https://doi.org/10.31234/osf.io/y2fdh

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crvernon commented Sep 9, 2024

@editorialbot invite @skanwal as editor

👋 @skanwal - can you take this one on as editor?

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Invitation to edit this submission sent!

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skanwal commented Sep 10, 2024

Hi @crvernon - Yes, I can take this one.

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@editorialbot assign @skanwal as editor

Thanks @skanwal!

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Assigned! @skanwal is now the editor

@kinleyid
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Hello, just wanted to suggest some reviewers with R + decision making research expertise:

@skanwal
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skanwal commented Sep 30, 2024

Hello @PessoaP - will you be happy to review this submission?

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skanwal commented Sep 30, 2024

Hello @bkrayfield, will you be happy to review this submission?

@kinleyid
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kinleyid commented Nov 5, 2024

Hello, just popping back in to suggest some more reviewers:

@bkrayfield
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bkrayfield commented Nov 5, 2024

@skanwal I can review the submission.

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skanwal commented Nov 5, 2024

@editorialbot assign @bkrayfield as reviewer

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I'm sorry human, I don't understand that. You can see what commands I support by typing:

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skanwal commented Nov 5, 2024

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Hello @skanwal, here are the things you can ask me to do:


# List all available commands
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# Add to this issue's reviewers list
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# Get a list of all editors's GitHub handles
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@skanwal
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skanwal commented Nov 5, 2024

@editorialbot add @bkrayfield as reviewer

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@bkrayfield added to the reviewers list!

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skanwal commented Nov 5, 2024

Hello @mashrur-ayon - will you be happy to review this submission?

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Checklists can only be created once the review has started in the review issue

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kinleyid commented Nov 8, 2024

@editorialbot check repository

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.06 s (990.2 files/s, 326602.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JavaScript                      11           2546           2638           9642
R                               18            364            857           1688
Markdown                         3            177              0            788
Rmd                             15            214            429            273
YAML                             4             23              9            109
CSS                              8             29             41            104
TeX                              1              9              0            104
Sass                             1              4              0             71
-------------------------------------------------------------------------------
SUM:                            61           3366           3974          12779
-------------------------------------------------------------------------------

Commit count by author:

   102	Isaac Kinley

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Paper file info:

📄 Wordcount for paper.md is 377

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

@kinleyid
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kinleyid commented Nov 8, 2024

@editorialbot check repository

Re-checking the repository since I made a few changes to it recently!

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skanwal commented Nov 13, 2024

Hello @mashrur-ayon - pinging again in case you missed the previous notification.
Will you be happy to review this submission?

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skanwal commented Nov 13, 2024

Hello - @marberts - are you able to review this submission for us?

@marberts
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@skanwal Yes, I can review.

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skanwal commented Nov 13, 2024

@editorialbot add @marberts as reviewer

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@marberts added to the reviewers list!

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skanwal commented Nov 13, 2024

Thanks @bkrayfield and @marberts. I'll create a review issue for this submission.

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skanwal commented Nov 13, 2024

@editorialbot start review

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OK, I've started the review over in #7472.

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