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[REVIEW]: Eyestream: An open WebSocket-based middleware for serializing and streaming eye tracker event data from Gazepoint GP3 HD research hardware #1620

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whedon opened this issue Aug 2, 2019 · 69 comments
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accepted published Papers published in JOSS recommend-accept Papers recommended for acceptance in JOSS. review

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@whedon
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whedon commented Aug 2, 2019

Submitting author: @MLHale (Matthew Hale)
Repository: https://github.com/MLHale/eyestream
Version: 1.1
Editor: @cMadan
Reviewer: @RingoHHuang, @adswa
Archive: 10.5281/zenodo.3549022

Status

status

Status badge code:

HTML: <a href="http://joss.theoj.org/papers/fd9d05f026d1acc24d023163eba34267"><img src="http://joss.theoj.org/papers/fd9d05f026d1acc24d023163eba34267/status.svg"></a>
Markdown: [![status](http://joss.theoj.org/papers/fd9d05f026d1acc24d023163eba34267/status.svg)](http://joss.theoj.org/papers/fd9d05f026d1acc24d023163eba34267)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@RingoHHuang & @adswa, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:

  1. Make sure you're logged in to your GitHub account
  2. Be sure to accept the invite at this URL: https://github.com/openjournals/joss-reviews/invitations

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @cMadan know.

Please try and complete your review in the next two weeks

Review checklist for @RingoHHuang

Conflict of interest

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Version: 1.1
  • Authorship: Has the submitting author (@MLHale) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the function of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Authors: Does the paper.md file include a list of authors with their affiliations?
  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • References: Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?

Review checklist for @adswa

Conflict of interest

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Version: 1.1
  • Authorship: Has the submitting author (@MLHale) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the function of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Authors: Does the paper.md file include a list of authors with their affiliations?
  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • References: Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?
@whedon
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whedon commented Aug 2, 2019

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks. @RingoHHuang, @adswa it looks like you're currently assigned to review this paper 🎉.

⭐ Important ⭐

If you haven't already, you should seriously consider unsubscribing from GitHub notifications for this (https://github.com/openjournals/joss-reviews) repository. As a reviewer, you're probably currently watching this repository which means for GitHub's default behaviour you will receive notifications (emails) for all reviews 😿

To fix this do the following two things:

  1. Set yourself as 'Not watching' https://github.com/openjournals/joss-reviews:

watching

  1. You may also like to change your default settings for this watching repositories in your GitHub profile here: https://github.com/settings/notifications

notifications

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

@whedon
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whedon commented Aug 2, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented Aug 2, 2019

@cMadan
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cMadan commented Sep 6, 2019

@adswa @RingoHHuang, how are your reviews progressing? Thanks!

@adswa
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adswa commented Sep 6, 2019

Thanks for the poke, and sorry for the delay @cMadan . I have a long train ride upcoming on sunday and plan to finish it then...

@cMadan
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cMadan commented Sep 8, 2019

@adswa, no worries, thanks for the update!

@adswa
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adswa commented Sep 8, 2019

(My apologies - cancelled train, overcrowded replacement, no WIFI. I'll try to squeeze it in over the next two days)

@adswa
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adswa commented Sep 10, 2019

Hey everyone, from my POV and based on what I am able to review given I don't have the hardware and OS available to test the full functionality, my review is finished.
I can confirm that the items on the checklist apply with the exception of "functionality". I have a minor issue open regarding the paper, but once this is addressed, I'd be happy to approve this submission - all with the explicit notion that I was not able to actually test the functionality. Thanks to @MLHale for providing an open source interface to make the raw data accessible, and for being so swift and diligent in replying to my issues, and thanks to everyone involved for this wonderful way of publishing and reviewing research items!

@RingoHHuang
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@cMadan - I'll find time to test the program with the Gazepoint hardware some time this week.

@MLHale
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MLHale commented Sep 10, 2019

@adswa - I have implemented your change list. Really thanks again for all of your review inputs and thoughtful contributions. I also like this collaborative process - it was been very constructive to receive and implement feedback in this way!

@cMadan
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cMadan commented Sep 11, 2019

@adswa, thanks for the update! That sounds good to me--I really appreciate your thorough efforts here.

@RingoHHuang, great, looking forward to it!

@MLHale, I'm glad to hear you're finding the review process here constructive :).

@RingoHHuang
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Hi @cMadan @MLHale @adswa,

I've just tested Eyestream using my Gazepoint 60 Hz eye-tracker and can confirm its functionality. My review of this submission is complete, and I'm ready to approve it. Thanks @MLHale for your help in addressing my many installation and testing questions, and for amending the documentation accordingly. I think Eyestream will be a valuable addition to the eye-tracking development community and will broaden the use case for Gazepoint eye-trackers. I'm excited to see future applications built off of this software. Thanks to all involved - it was a pleasure reviewing this submission!

@MLHale
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MLHale commented Sep 16, 2019

@adswa @RingoHHuang @cMadan - Thanks again for your time and effort in the review. I really appreciate all of the testing and improvements.

@MLHale
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MLHale commented Sep 23, 2019

Hi @cMadan - Is there anything else I need to do to move the review forward? Thanks!

@cMadan
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cMadan commented Sep 26, 2019

@RingoHHuang, thanks for reviewing this submission!

@MLHale, I need to do some final checks, but we're almost done! (So the review is with me now.)

@cMadan
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cMadan commented Oct 18, 2019

@whedon generate pdf

@whedon
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whedon commented Oct 18, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented Oct 18, 2019

@cMadan
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cMadan commented Oct 18, 2019

@MLHale, it looks like the bib needs a few fixes (missing year, missing capitalisation, missing page numbers).

@MLHale
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MLHale commented Oct 18, 2019

@cmaden - I will look over that and get it fixed tonight. Thanks

@cMadan
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cMadan commented Nov 20, 2019

@whedon set 10.5281/zenodo.3549022 as archive

@whedon
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whedon commented Nov 20, 2019

OK. 10.5281/zenodo.3549022 is the archive.

@cMadan
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cMadan commented Nov 20, 2019

@whedon accept

@whedon
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whedon commented Nov 20, 2019

Attempting dry run of processing paper acceptance...

@whedon
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whedon commented Nov 20, 2019


OK DOIs

- 10.1145/2723872.2723882 is OK
- 10.24251/HICSS.2018.108 is OK
- https://doi.org/10.29268/stsc.2017.5.1.1 is OK
- 10.1109/ICWS.2015.49 is OK
- 10.1109/HICSS.2015.670 is OK
- 10.1016/j.bbr.2006.07.024 is OK
- 10.1145/507079.507082 is OK
- 10.1109/TCE.2012.6227433 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@whedon
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whedon commented Nov 20, 2019

Check final proof 👉 openjournals/joss-papers#1111

If the paper PDF and Crossref deposit XML look good in openjournals/joss-papers#1111, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true

@cMadan
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cMadan commented Nov 20, 2019

@openjournals/joss-eics, I think we're all set to accept here!

@MLHale
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MLHale commented Nov 20, 2019

@cMadan - Thanks again for all of your help. I want to reiterate how awesome this review process has been. Seriously the most transparent, useful, and enjoyable review process I've seen.

I really like that reviewer feedback is so collaborative, can be incorporated into the work in near real-time, and then iterated on if the fix didn't address the feedback. This kind of process makes for a better product and is (I hope) the future of academia and publishing!

I'll definitely be publishing in this venue again!

@kthyng
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kthyng commented Nov 21, 2019

Hi @MLHale I've made some tweaks to your paper.md and paper.bib to improve spacing around the references and preserve capitalization (mostly). Please merge PRs 11 and 12 if you please.

@MLHale
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MLHale commented Nov 21, 2019

@kthyng Thanks for these improvements. I just accepted the PRs.

@kthyng
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kthyng commented Nov 21, 2019

@whedon generate pdf

@whedon
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whedon commented Nov 21, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented Nov 21, 2019

@kthyng
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kthyng commented Nov 21, 2019

Ok looks good!

@kthyng
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kthyng commented Nov 21, 2019

@whedon accept

@whedon
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whedon commented Nov 21, 2019

Attempting dry run of processing paper acceptance...

@whedon
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whedon commented Nov 21, 2019


OK DOIs

- 10.1145/2723872.2723882 is OK
- 10.24251/HICSS.2018.108 is OK
- https://doi.org/10.29268/stsc.2017.5.1.1 is OK
- 10.1109/ICWS.2015.49 is OK
- 10.1109/HICSS.2015.670 is OK
- 10.1016/j.bbr.2006.07.024 is OK
- 10.1145/507079.507082 is OK
- 10.1109/TCE.2012.6227433 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@whedon
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whedon commented Nov 21, 2019

Check final proof 👉 openjournals/joss-papers#1123

If the paper PDF and Crossref deposit XML look good in openjournals/joss-papers#1123, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true

@kthyng
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kthyng commented Nov 21, 2019

@whedon accept deposit=true

@whedon
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whedon commented Nov 21, 2019

Doing it live! Attempting automated processing of paper acceptance...

@whedon
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whedon commented Nov 21, 2019

🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

@whedon
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whedon commented Nov 21, 2019

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

  1. Check final PDF and Crossref metadata that was deposited 👉 Creating pull request for 10.21105.joss.01620 joss-papers#1124
  2. Wait a couple of minutes to verify that the paper DOI resolves https://doi.org/10.21105/joss.01620
  3. If everything looks good, then close this review issue.
  4. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? notify your editorial technical team...

@kthyng
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kthyng commented Nov 21, 2019

Congrats to @MLHale on your new paper! Thanks to editor @cMadan and reviewers @RingoHHuang and @adswa — we wouldn't be here without you!

@kthyng kthyng closed this as completed Nov 21, 2019
@whedon
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whedon commented Nov 21, 2019

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
[![DOI](https://joss.theoj.org/papers/10.21105/joss.01620/status.svg)](https://doi.org/10.21105/joss.01620)

HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.01620">
  <img src="https://joss.theoj.org/papers/10.21105/joss.01620/status.svg" alt="DOI badge" >
</a>

reStructuredText:
.. image:: https://joss.theoj.org/papers/10.21105/joss.01620/status.svg
   :target: https://doi.org/10.21105/joss.01620

This is how it will look in your documentation:

DOI

We need your help!

Journal of Open Source Software is a community-run journal and relies upon volunteer effort. If you'd like to support us please consider doing either one (or both) of the the following:

@MLHale
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MLHale commented Nov 22, 2019

@kthyng - Thanks!

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