diff --git a/joss.04417/10.21105.joss.04417.crossref.xml b/joss.04417/10.21105.joss.04417.crossref.xml new file mode 100644 index 0000000000..a03c92ee1b --- /dev/null +++ b/joss.04417/10.21105.joss.04417.crossref.xml @@ -0,0 +1,329 @@ + + + + 20220626T074605-143802ca373313097189b5b559a63d801677f867 + 20220626074605 + + JOSS Admin + admin@theoj.org + + The Open Journal + + + + + Journal of Open Source Software + JOSS + 2475-9066 + + 10.21105/joss + https://joss.theoj.org/ + + + + + 06 + 2022 + + + 7 + + 74 + + + + A-SLOTH: Ancient Stars and Local Observables by Tracing +Halos + + + + Mattis + Magg + https://orcid.org/0000-0002-9022-5136 + + + Tilman + Hartwig + https://orcid.org/0000-0001-6742-8843 + + + Li-Hsin + Chen + + + Yuta + Tarumi + https://orcid.org/0000-0002-9801-7788 + + + + 06 + 26 + 2022 + + + 4417 + + + 10.21105/joss.04417 + + + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + + + + Software archive + 10.5281/zenodo.6683682 + + + GitHub review issue + https://github.com/openjournals/joss-reviews/issues/4417 + + + + 10.21105/joss.04417 + https://joss.theoj.org/papers/10.21105/joss.04417 + + + https://joss.theoj.org/papers/10.21105/joss.04417.pdf + + + + + + Generating dark matter halo merger +trees + Parkinson + Monthly Notices of the Royal Astronomical +Society + 383 + 10.1111/j.1365-2966.2007.12517.x + 2008 + Parkinson, H., Cole, S., & Helly, +J. (2008). Generating dark matter halo merger trees. Monthly Notices of +the Royal Astronomical Society, 383, 557–564. +https://doi.org/10.1111/j.1365-2966.2007.12517.x + + + Constraining the primordial initial mass +function with stellar archaeology + Hartwig + Monthly Notices of the Royal Astronomical +Society + 447 + 10.1093/mnras/stu2740 + 2015 + Hartwig, T., Bromm, V., Klessen, R. +S., & Glover, S. C. O. (2015). Constraining the primordial initial +mass function with stellar archaeology. Monthly Notices of the Royal +Astronomical Society, 447, 3892–3908. +https://doi.org/10.1093/mnras/stu2740 + + + Exploring the nature of the Lyman-\alpha +emitter CR7 + Hartwig + Monthly Notices of the Royal Astronomical +Society + 462 + 10.1093/mnras/stw1775 + 2016 + Hartwig, T., Latif, M. A., Magg, M., +Bromm, V., Klessen, R. S., Glover, S. C. O., Whalen, D. J., Pellegrini, +E. W., & Volonteri, M. (2016). Exploring the nature of the +Lyman-\alpha emitter CR7. Monthly Notices of the Royal Astronomical +Society, 462, 2184–2202. +https://doi.org/10.1093/mnras/stw1775 + + + Gravitational waves from the remnants of the +first stars + Hartwig + Monthly Notices of the Royal Astronomical +Society + 460 + 10.1093/mnrasl/slw074 + 2016 + Hartwig, T., Volonteri, M., Bromm, +V., Klessen, R. S., Barausse, E., Magg, M., & Stacy, A. (2016). +Gravitational waves from the remnants of the first stars. Monthly +Notices of the Royal Astronomical Society, 460, L74–L78. +https://doi.org/10.1093/mnrasl/slw074 + + + Descendants of the first stars: the distinct +chemical signature of second generation stars + Hartwig + Monthly Notices of the Royal Astronomical +Society + 10.1093/mnras/sty1176 + 2018 + Hartwig, T., Yoshida, N., Magg, M., +Frebel, A., Glover, S. C. O., Gómez, F. A., Griffen, B., Ishigaki, M. +N., Ji, A. P., Klessen, R. S., O’Shea, B. W., & Tominaga, N. (2018). +Descendants of the first stars: the distinct chemical signature of +second generation stars. Monthly Notices of the Royal Astronomical +Society. https://doi.org/10.1093/mnras/sty1176 + + + Effect of the cosmological transition to +metal-enriched star-formation on the hydrogen 21-cm +signal + Magg + Monthly Notices of the Royal Astronomical +Society + 10.1093/mnras/stac1664 + 2022 + Magg, M., Reis, I., Fialkov, A., +Barkana, R., Klessen, R. S., Glover, S. C. O., Chen, L.-H., Hartwig, T., +& Schauer, A. T. P. (2022). Effect of the cosmological transition to +metal-enriched star-formation on the hydrogen 21-cm signal. Monthly +Notices of the Royal Astronomical Society. +https://doi.org/10.1093/mnras/stac1664 + + + Tracing stars in Milky Way satellites with +A-SLOTH + Chen + arXiv e-prints + 2022 + Chen, L.-H., Magg, M., Hartwig, T., +Glover, S. C. O., Ji, A. P., & Klessen, R. S. (2022). Tracing stars +in Milky Way satellites with A-SLOTH. arXiv e-Prints, arXiv:2202.01220. +https://arxiv.org/abs/2202.01220 + + + Predicting the locations of possible +long-lived low-mass first stars: importance of satellite dwarf +galaxies + Magg + Monthly Notices of the Royal Astronomical +Society + 473 + 10.1093/mnras/stx2729 + 2018 + Magg, M., Hartwig, T., Agarwal, B., +Frebel, A., Glover, S. C. O., Griffen, B. F., & Klessen, R. S. +(2018). Predicting the locations of possible long-lived low-mass first +stars: importance of satellite dwarf galaxies. Monthly Notices of the +Royal Astronomical Society, 473, 5308–5323. +https://doi.org/10.1093/mnras/stx2729 + + + A new statistical model for Population III +supernova rates: discriminating between \LambdaCDM and WDM +cosmologies + Magg + Monthly Notices of the Royal Astronomical +Society + 462 + 10.1093/mnras/stw1882 + 2016 + Magg, M., Hartwig, T., Glover, S. C. +O., Klessen, R. S., & Whalen, D. J. (2016). A new statistical model +for Population III supernova rates: discriminating between \LambdaCDM +and WDM cosmologies. Monthly Notices of the Royal Astronomical Society, +462, 3591–3601. +https://doi.org/10.1093/mnras/stw1882 + + + Implications of Inhomogeneous Metal Mixing +for Stellar Archaeology + Tarumi + Astrophysical Journal + 1 + 897 + 10.3847/1538-4357/ab960d + 2020 + Tarumi, Y., Hartwig, T., & Magg, +M. (2020). Implications of Inhomogeneous Metal Mixing for Stellar +Archaeology. Astrophysical Journal, 897(1), 58. +https://doi.org/10.3847/1538-4357/ab960d + + + The numerical frontier of the high-redshift +Universe + Greif + Computational Astrophysics and +Cosmology + 2 + 10.1186/s40668-014-0006-2 + 2015 + Greif, T. H. (2015). The numerical +frontier of the high-redshift Universe. Computational Astrophysics and +Cosmology, 2, 3. +https://doi.org/10.1186/s40668-014-0006-2 + + + Limits on Population III star formation with +the most iron-poor stars + de Bennassuti + Monthly Notices of the Royal Astronomical +Society + 465 + 10.1093/mnras/stw2687 + 2017 + de Bennassuti, M., Salvadori, S., +Schneider, R., Valiante, R., & Omukai, K. (2017). Limits on +Population III star formation with the most iron-poor stars. Monthly +Notices of the Royal Astronomical Society, 465, 926–940. +https://doi.org/10.1093/mnras/stw2687 + + + Self-consistent semi-analytic models of the +first stars + Visbal + Monthly Notices of the Royal Astronomical +Society + 4 + 475 + 10.1093/mnras/sty142 + 2018 + Visbal, E., Haiman, Z., & Bryan, +G. L. (2018). Self-consistent semi-analytic models of the first stars. +Monthly Notices of the Royal Astronomical Society, 475(4), 5246–5256. +https://doi.org/10.1093/mnras/sty142 + + + The Origin of r-process Enhanced Metal-poor +Halo Stars In Now-destroyed Ultra-faint Dwarf Galaxies + Brauer + Astrophysical Journal + 2 + 871 + 10.3847/1538-4357/aafafb + 2019 + Brauer, K., Ji, A. P., Frebel, A., +Dooley, G. A., Gómez, F. A., & O’Shea, B. W. (2019). The Origin of +r-process Enhanced Metal-poor Halo Stars In Now-destroyed Ultra-faint +Dwarf Galaxies. Astrophysical Journal, 871(2), 247. +https://doi.org/10.3847/1538-4357/aafafb + + + Where are the Low-mass Population III +Stars? + Ishiyama + Astrophysical Journal + 826 + 10.3847/0004-637X/826/1/9 + 2016 + Ishiyama, T., Sudo, K., Yokoi, S., +Hasegawa, K., Tominaga, N., & Susa, H. (2016). Where are the +Low-mass Population III Stars? Astrophysical Journal, 826, 9. +https://doi.org/10.3847/0004-637X/826/1/9 + + + + + + diff --git a/joss.04417/10.21105.joss.04417.jats b/joss.04417/10.21105.joss.04417.jats new file mode 100644 index 0000000000..037422bbdc --- /dev/null +++ b/joss.04417/10.21105.joss.04417.jats @@ -0,0 +1,512 @@ + + +
+ + + + +Journal of Open Source Software +JOSS + +2475-9066 + +Open Journals + + + +4417 +10.21105/joss.04417 + +A-SLOTH: Ancient Stars and Local Observables by Tracing +Halos + + + +0000-0002-9022-5136 + +Magg +Mattis + + + + + +0000-0001-6742-8843 + +Hartwig +Tilman + + + + + + + +Chen +Li-Hsin + + + + + +0000-0002-9801-7788 + +Tarumi +Yuta + + + + + +Institut für Theoretische Astrophysik, Universität +Heidelberg, Germany + + + + +International Max Planck Research School for Astronomy and +Cosmic Physics, University of Heidelberg (IMPRS-HD), +Germany + + + + +Institute for Physics of Intelligence, The University of +Tokyo, Japan + + + + +Department of Physics, The University of Tokyo, +Japan + + + + +Kavli Institute for the Physics and Mathematics of the +Universe (WPI), The University of Tokyo, Japan + + + + +22 +6 +2022 + +7 +74 +4417 + +Authors of papers retain copyright and release the +work under a Creative Commons Attribution 4.0 International License (CC +BY 4.0) +2022 +The article authors + +Authors of papers retain copyright and release the work under +a Creative Commons Attribution 4.0 International License (CC BY +4.0) + + + +Fortran +Population III Stars +Semi-Analytical + + + + + + Summary +

Galaxies are thought to reside inside of large gravitationally + bound structures of dark matter, so-called haloes. While the smallest + of these haloes host no or only a few stars, the biggest host entire + clusters of galaxies. Over cosmic history, haloes often collided and + merged, forming bigger and bigger structures. Merger trees, i.e., + catalogues of haloes evolving and connections between them as they + grow and merge, have become a vital tool in describing and + understanding the history of cosmological objects such as our Galaxy. + Semi-analytical models, built on top of such merger trees, are a + common approach for theoretical studies in cosmology. The + semi-analytical nature of such models is especially beneficial when + the dynamic range in spatial and time scales that need to be + considered becomes too large for numerical simulations.

+

Ancient Stars and Local Observables by Tracing Halos (A-SLOTH) is + such a semi-analytical model and it is designed to simulate star + formation in the early Universe in a fast and accessible way. It uses + merger trees, either from numerical simulations or generated by + statistical algorithms to describe the history of galaxies. The + processes of baryonic physics, in particular gas cooling, star + formation and stellar feedback are described with approximations and + statistical models. The range of applications for this model is + extensive and we, therefore, make it available to the scientific + community. We also provide + full + documentation.

+ + + Statement of need +

Attempts to model the early Universe are notorious for the wide + range in spatial and time scales that they need to consider + (Greif, + 2015). Therefore, a wide range of authors has resorted to + developing semi-analytical models for investigating the high-redshift + Universe + (Brauer + et al., 2019; + de + Bennassuti et al., 2017; + Ishiyama + et al., 2016; + Visbal + et al., 2018). These models differ widely in their scope, and + often they are specifically geared towards addressing a specific issue + or question. With A-SLOTH, we offer a highly capable semi-analytical + model that can make predictions in numerous areas, ranging from 21-cm + cosmology to metal-poor stars in the Milky-Way + (Chen + et al., 2022; + Hartwig + et al., 2015, + 2018; + Hartwig, + Volonteri, et al., 2016; + Hartwig, + Latif, et al., 2016; + M. + Magg et al., 2018, + 2016; + Mattis + Magg et al., 2022; + Tarumi + et al., 2020). This model was originally based on the + Extended-Press-Schechter algorithm and more specifically the GALFORM + code + (Parkinson + et al., 2008) but has since evolved to use merger trees from + numerical simulation. A-SLOTH has the primary purpose of quickly + simulating star formation in the early Universe and connecting it to + present-day and high-redshift observables, such as the metallicity + distribution function of the Milky Way or the ionization history of + the Universe. By modifying the parameters of the models governing the + high-redshift processes and repeated comparison of the results, a user + can investigate the relationship between assumptions about poorly + understood processes in the high-redshift Universe and astrophysical + observations. Because the model is highly optimized, A-SLOTH can build + up a Milky-Way-like galaxy star by star in only a few minutes. The + code is written in a modular way, such that users can add new physics + and go from an idea to a set of predictions in a short time and + without developing a completely new model of high-redshift star + formation.

+ + + Acknowledgements +

We appreciate the thorough testing and constructive feedback from + Kaley Brauer and Greg Bryan during code review. We thank Britton Smith + for very helpful advice with regards to the publication of open-source + software. We acknowledge funding from JSPS KAKENHI Grant Numbers + 19K23437 and 20K14464, from Deutsche Forschungsgemeinschaft (DFG) via + the Collaborative Research Center (SFB 881, Project-ID 138713538) + ``The Milky Way System’’ (sub-project A1), and from the + Max-Planck-Gesellschaft via the fellowship of the International Max + Planck Research School for Astronomy and Cosmic Physics at the + University of Heidelberg (IMPRS-HD).

+ + + + + + + + ParkinsonH. + ColeS. + HellyJ. + + Generating dark matter halo merger trees + Monthly Notices of the Royal Astronomical Society + 200801 + 383 + https://arxiv.org/abs/0708.1382 + 10.1111/j.1365-2966.2007.12517.x + 557 + 564 + + + + + + HartwigT. + BrommV. + KlessenR. S. + GloverS. C. O. + + Constraining the primordial initial mass function with stellar archaeology + Monthly Notices of the Royal Astronomical Society + 201503 + 447 + https://arxiv.org/abs/1411.1238 + 10.1093/mnras/stu2740 + 3892 + 3908 + + + + + + HartwigT. + LatifM. A. + MaggM. + BrommV. + KlessenR. S. + GloverS. C. O. + WhalenD. J. + PellegriniE. W. + VolonteriM. + + Exploring the nature of the Lyman-\alpha emitter CR7 + Monthly Notices of the Royal Astronomical Society + 201610 + 462 + https://arxiv.org/abs/1512.01111 + 10.1093/mnras/stw1775 + 2184 + 2202 + + + + + + HartwigT. + VolonteriM. + BrommV. + KlessenR. S. + BarausseE. + MaggM. + StacyA. + + Gravitational waves from the remnants of the first stars + Monthly Notices of the Royal Astronomical Society + 201607 + 460 + https://arxiv.org/abs/1603.05655 + 10.1093/mnrasl/slw074 + L74 + L78 + + + + + + HartwigT. + YoshidaN. + MaggM. + FrebelA. + GloverS. C. O. + GómezF. A. + GriffenB. + IshigakiM. N. + JiA. P. + KlessenR. S. + O’SheaB. W. + TominagaN. + + Descendants of the first stars: the distinct chemical signature of second generation stars + Monthly Notices of the Royal Astronomical Society + 201805 + https://arxiv.org/abs/1801.05044 + 10.1093/mnras/sty1176 + + + + + + MaggMattis + ReisItamar + FialkovAnastasia + BarkanaRennan + KlessenRalf S. + GloverSimon C. O. + ChenLi-Hsin + HartwigTilman + SchauerAnna T. P. + + Effect of the cosmological transition to metal-enriched star-formation on the hydrogen 21-cm signal + Monthly Notices of the Royal Astronomical Society + 202206 + https://arxiv.org/abs/2110.15948 + 10.1093/mnras/stac1664 + + + + + + ChenLi-Hsin + MaggMattis + HartwigTilman + GloverSimon C. O. + JiAlexander P. + KlessenRalf S. + + Tracing stars in Milky Way satellites with A-SLOTH + arXiv e-prints + 202202 + https://arxiv.org/abs/2202.01220 + arXiv:2202.01220 + + + + + + + MaggM. + HartwigT. + AgarwalB. + FrebelA. + GloverS. C. O. + GriffenB. F. + KlessenR. S. + + Predicting the locations of possible long-lived low-mass first stars: importance of satellite dwarf galaxies + Monthly Notices of the Royal Astronomical Society + 201802 + 473 + https://arxiv.org/abs/1706.07054 + 10.1093/mnras/stx2729 + 5308 + 5323 + + + + + + MaggM. + HartwigT. + GloverS. C. O. + KlessenR. S. + WhalenD. J. + + A new statistical model for Population III supernova rates: discriminating between \LambdaCDM and WDM cosmologies + Monthly Notices of the Royal Astronomical Society + 201611 + 462 + https://arxiv.org/abs/1606.06294 + 10.1093/mnras/stw1882 + 3591 + 3601 + + + + + + TarumiYuta + HartwigTilman + MaggMattis + + Implications of Inhomogeneous Metal Mixing for Stellar Archaeology + Astrophysical Journal + 202007 + 897 + 1 + https://arxiv.org/abs/2005.10401 + 10.3847/1538-4357/ab960d + 58 + + + + + + + GreifT. H. + + The numerical frontier of the high-redshift Universe + Computational Astrophysics and Cosmology + 201503 + 2 + https://arxiv.org/abs/1410.3482 + 10.1186/s40668-014-0006-2 + 3 + + + + + + + de BennassutiM. + SalvadoriS. + SchneiderR. + ValianteR. + OmukaiK. + + Limits on Population III star formation with the most iron-poor stars + Monthly Notices of the Royal Astronomical Society + 201702 + 465 + https://arxiv.org/abs/1610.05777 + 10.1093/mnras/stw2687 + 926 + 940 + + + + + + VisbalEli + HaimanZoltán + BryanGreg L. + + Self-consistent semi-analytic models of the first stars + Monthly Notices of the Royal Astronomical Society + 201804 + 475 + 4 + https://arxiv.org/abs/1705.09005 + 10.1093/mnras/sty142 + 5246 + 5256 + + + + + + BrauerKaley + JiAlexander P. + FrebelAnna + DooleyGregory A. + GómezFacundo A. + O’SheaBrian W. + + The Origin of r-process Enhanced Metal-poor Halo Stars In Now-destroyed Ultra-faint Dwarf Galaxies + Astrophysical Journal + 201902 + 871 + 2 + https://arxiv.org/abs/1809.05539 + 10.3847/1538-4357/aafafb + 247 + + + + + + + IshiyamaT. + SudoK. + YokoiS. + HasegawaK. + TominagaN. + SusaH. + + Where are the Low-mass Population III Stars? + Astrophysical Journal + 201607 + 826 + https://arxiv.org/abs/1602.00465 + 10.3847/0004-637X/826/1/9 + 9 + + + + + +
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